View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0582_high_3 (Length: 411)
Name: NF0582_high_3
Description: NF0582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0582_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 34423197 - 34422822
Alignment:
| Q |
1 |
gatgtatttggtcgaaaattacatcaactttctttgacctacttttgcttataattaaggccagatggagtaacttttaatcactctcacctccactgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
34423197 |
gatgtatttggtcgaaaattacatcaactttctttgacctacttttgcttataattaaggccagatggagtaacttttaatccctctcacctccactaca |
34423098 |
T |
|
| Q |
101 |
aaacatgaatatatttaagatggtacatgaatgagagaaatcattaatgaacagaacctcgaagtaactgattttttcagtttttcctttcttcg-taaa |
199 |
Q |
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|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
34423097 |
aaacatgaatatatttaagatggcacatgaat--gagaaatcattaatgaacagaacctcgaagtaactaattttttcagtttttcctttcttcgttaaa |
34423000 |
T |
|
| Q |
200 |
aaagacacagaactcttttatatagatgttccacgatatacaatgacagaaatttgaggttagattagtttgacaacgctatttaacacaacagttnnnn |
299 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34422999 |
aaagacacaaaactcttttatatagatgttccacgatatacaatgacagaaagttgaggttagattagtttgacaacgctatttaacacaacagttgggg |
34422900 |
T |
|
| Q |
300 |
nnntatacgcatgacataaaatagcattaaacaatgctacagataataacataataagaggaatcaccttggtctgtg |
377 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34422899 |
gagtatacgcatgacataaaatagcattaaacaatgctacagataataacataataataggaatcaccttggtctgtg |
34422822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 34423192 - 34423244
Alignment:
| Q |
20 |
tacatcaactttctttgacctacttttgcttataattaaggccagatggagta |
72 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
34423192 |
tacatcaactttttttgacctacttttgcttataattaaggctagagggagta |
34423244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 3167645 - 3167695
Alignment:
| Q |
22 |
catcaactttctttgacctacttttgcttataattaaggccagatggagta |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| | |||||| |
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|
| T |
3167645 |
catcaactttctttgacctacttttgcttataatttaggccacagggagta |
3167695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 11558442 - 11558493
Alignment:
| Q |
20 |
tacatcaactttctttgacctacttttgcttataattaaggccagatggagt |
71 |
Q |
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|
|||||| | ||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
11558442 |
tacatcgattttctttgacctagttttgcttataattaaggccagagggagt |
11558493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 11558384 - 11558353
Alignment:
| Q |
20 |
tacatcaactttctttgacctacttttgctta |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
11558384 |
tacatcaactttctttgacctacttttgctta |
11558353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 23314714 - 23314672
Alignment:
| Q |
23 |
atcaactttctttgacctacttttgcttataattaaggccaga |
65 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || |||||| |
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|
| T |
23314714 |
atcaactttctttgaccaacttttgcttataatcaatgccaga |
23314672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 23314749 - 23314778
Alignment:
| Q |
28 |
ctttctttgacctacttttgcttataatta |
57 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
23314749 |
ctttctttgacctacttttgcttataatta |
23314778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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