View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0582_high_8 (Length: 257)
Name: NF0582_high_8
Description: NF0582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0582_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 50993633 - 50993384
Alignment:
| Q |
1 |
atttgcagccaccgccgaatcaacaatattgtaaacctctatatcaaaacaaccaggcaatttcctctctctcctcaactcaacgttcatcaaccaaaac |
100 |
Q |
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| T |
50993633 |
atttgcagccaccgccgaatcaagaatattgtaaacctctatatcaaaacaaccaggcaatttcctctctctcctcaactcaacgttcatcaaccaaaac |
50993534 |
T |
|
| Q |
101 |
gactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgccccatcgcttcttacactgaatcggtgtccggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50993533 |
gactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgccccatcgcttcttacactgaatcggtgtccggt |
50993434 |
T |
|
| Q |
201 |
tcacaccatgcttctcacagtacgaagagaccaacgtccacttcatctca |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50993433 |
tcacaccatgcttctcacagtacgaagagaccaacgtccacttcttctca |
50993384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 6526880 - 6527085
Alignment:
| Q |
31 |
gtaaacctctatatcaaaacaaccaggcaatttcctctctctcctcaactcaacgttcatcaaccaaaacgactcagtttcatcactcacctgagactcc |
130 |
Q |
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||||||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||| |||| |
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| T |
6526880 |
gtaaacctccttatcaaaatacccaggcaatttcctctctctcctcaaatcattcctcatcaaccaaaacgactccgtttcatctctcacctgactctcc |
6526979 |
T |
|
| Q |
131 |
cactccttaatcttcttataatctgcggtgagattgccccatcgcttcttacactgaatcggtgtccggttcacaccatgcttctcacagtacgaagaga |
230 |
Q |
| |
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|||||||| ||||||||||||||| ||| ||| |||| ||| |||||| ||||||||||||| |||||||||||| || |||| ||| |||||||| | |
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| T |
6526980 |
cactcctttatcttcttataatctccggcgaggttgctccaccgcttcctacactgaatcggaccccggttcacaccgtgtttcttacaatacgaagaaa |
6527079 |
T |
|
| Q |
231 |
ccaacg |
236 |
Q |
| |
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|||||| |
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| T |
6527080 |
ccaacg |
6527085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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