View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0582_low_1 (Length: 622)
Name: NF0582_low_1
Description: NF0582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0582_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 22 - 599
Target Start/End: Original strand, 467835 - 468408
Alignment:
| Q |
22 |
catcatcacagaatgacatgcaagtaaacattaactaataaccattatatatcgtttttcaaattcattttttatgacgaaacagactaaatagttaata |
121 |
Q |
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| T |
467835 |
catcattacagaatgacatgcaagtaaacattaactaataaccattatatatcgtttttcaaattcattttttatgacgaaacagactaaatagttaata |
467934 |
T |
|
| Q |
122 |
tgaatgcatattaacataatgaatttgattttctcttatttattggaacgaacaacaaattattacaatgattcagatcctagttcaaaatattacatct |
221 |
Q |
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| T |
467935 |
tgaatgcatattaacataatgaatttgattttctcttatttattggaacaaacaacaaattattacaatgattcagatcctagttcaaaatattacatct |
468034 |
T |
|
| Q |
222 |
aaatggttggtttnnnnnnnntacatgttatcgtatcaatatttcacatgtattattgtgtcgtgactcgtgcagttttatgaataggtaaaagccatgg |
321 |
Q |
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| T |
468035 |
aaatggttggtttaaaaaaaatacatgttatcgtatcaatatttcacatgtattattgtgtcgtgactcgtgcagttttatgaataggtaaaagccatgg |
468134 |
T |
|
| Q |
322 |
cctgatattttgtttccattcttgaagttgaaacaaatattttgattcttaattcttcaggatattaagggactgtttactttgtgaaaaccnnnnnnna |
421 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
468135 |
cctggtattttgtttccattcttgaagttgaaacaaatattttgattcttaattcttcaggatattaagggactgtttactttgtgaaaaacttttttta |
468234 |
T |
|
| Q |
422 |
ttttcatctcttaaaatttgtgttagttttgcttgttaataaggnnnnnnngtgactttgaagtgaacacttgtcttgcattttagaaaacagtgaaaat |
521 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
468235 |
ttttcatttcttaaaatttgtgttagttttgcttgttaataagg-aaaaaagtgactttgaagtgaacacgtgtcttgcattttagaaaacagtgaaaat |
468333 |
T |
|
| Q |
522 |
gtcaacnnnnnnnnnnnnctgttttcattatttttgaaactgaatctttcctaactagcattttatcttctcttcatc |
599 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
468334 |
gtcaac---aaaaaaaaactgttttcattatttttgaaactgaatctttcctaactagcattttatcttctcttcatc |
468408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 17233913 - 17233967
Alignment:
| Q |
540 |
ctgttttcattatttttgaaactgaatctttcctaactagcattttatcttctct |
594 |
Q |
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|||||||||||||||||| || || ||| |||||| ||||||| ||||||||||| |
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| T |
17233913 |
ctgttttcattatttttggaaatgcatcattcctagctagcatattatcttctct |
17233967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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