View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0582_low_11 (Length: 311)

Name: NF0582_low_11
Description: NF0582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0582_low_11
NF0582_low_11
[»] chr3 (2 HSPs)
chr3 (31-244)||(3645984-3646197)
chr3 (241-300)||(3645649-3645704)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 3646197 - 3645984
Alignment:
Q  31 tctttatagaccatataacttttgttgtaaaaggtttcctagttagtgacggaggtaaataattgtttacagtattttgttgatacttgatatttagtgg 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||    
T  3646197 tctttatagaccatataacttttgttgtaaaaggtttcctagttagtgacggaggtaa-tgactgtttagagtattttgttgatacttgatatttagtgg 3646099  T
Q  131 atcatt-aactttacctaaaaaaggaaaacttggtcattccttgatttcttgattaccctaccaaatatagaaagatatgataccgcatgaacaggaccc 229  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3646098 atcatttaactttacctaaaaaaggaaaacttggtcattccttgatttcatgattaccctaccaaatatagaaagatatgatatcgcatgaacaggaccc 3645999  T
Q  230 atactgtcttatact 244  Q
    |||||||||||||||    
T  3645998 atactgtcttatact 3645984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 3645704 - 3645649
Alignment:
Q  241 tactaccgtgatttgtgtgtggtcgtcaaagtaacaacaagcatacatagatttattcat 300  Q
    |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  3645704 tactaccgtgatt----tgtggtcgtcaaagtaacaacaagcatacatagatttattcat 3645649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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