View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0582_low_7 (Length: 361)

Name: NF0582_low_7
Description: NF0582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0582_low_7
NF0582_low_7
[»] chr3 (5 HSPs)
chr3 (54-333)||(51942007-51942272)
chr3 (84-265)||(4582497-4582678)
chr3 (106-288)||(5155224-5155406)
chr3 (112-287)||(46478252-46478427)
chr3 (93-146)||(4614280-4614333)
[»] chr4 (3 HSPs)
chr4 (111-265)||(35160480-35160634)
chr4 (93-265)||(35154071-35154243)
chr4 (178-236)||(15555098-15555156)
[»] chr8 (2 HSPs)
chr8 (93-265)||(9677635-9677807)
chr8 (95-265)||(9693376-9693546)
[»] chr2 (1 HSPs)
chr2 (106-214)||(20154380-20154488)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 54 - 333
Target Start/End: Original strand, 51942007 - 51942272
Alignment:
Q  54 tcgtaagaacaatgtctcttcatgatcaacccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttt 153  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942007 tcgtaagaacaatgtctctccatgaccaacc-aaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttt 51942105  T
Q  154 tcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactg 253  Q
    |||| |||||| ||||||| ||||||||||||             ||| || ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  51942106 tcgccattgtctctgcaagttgtgctcagcat-------------tctgattgtcccacaccgcagcaacttctcgacttcctacgatccaaatcaactg 51942192  T
Q  254 atcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgcttctgccggtggacctcacctct 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942193 atcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgcttctgccggtggacctcacctct 51942272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 265
Target Start/End: Complemental strand, 4582678 - 4582497
Alignment:
Q  84 ccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagc 183  Q
    |||||||  |||||||||||||||||||||| || | ||||||||| ||||||| || ||||| || ||||| | | | || || |||| || |||||||    
T  4582678 ccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagc 4582579  T
Q  184 atgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 265  Q
    |||||||||||||||||| | || |||||| |  | || ||||| |||||||| |  |||||||||||||||||||||||||    
T  4582578 atgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaact 4582497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 106 - 288
Target Start/End: Original strand, 5155224 - 5155406
Alignment:
Q  106 atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatg 205  Q
    |||||||||||| ||||||  ||| ||| ||| || ||||| || ||||||| | |||| || |||| ||| || ||||| ||||||||||||||| | |    
T  5155224 atcgccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagg 5155323  T
Q  206 gtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttct 288  Q
    |||||||||  || || ||||| |||||||| |  |||||||| ||||| ||||||||| | || ||||| || |||||||||    
T  5155324 gtcccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaacgatcttgcctctcaacttgtttct 5155406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 287
Target Start/End: Original strand, 46478252 - 46478427
Alignment:
Q  112 aaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtccca 211  Q
    |||||| | ||||| ||| ||||||| ||||||||||| ||||| | | | || || |||| |||||| || || |||||| |||| ||| | |||||||    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtccca 46478351  T
Q  212 cacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttc 287  Q
    | |  || |||||| |  ||||||| | ||||||||| || ||||||||||||||| |||| |||||||| |||||    
T  46478352 ctcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcgcttcacagctcgtttc 46478427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 4614333 - 4614280
Alignment:
Q  93 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacat 146  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||| || |||||    
T  4614333 agtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaacat 4614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 35160480 - 35160634
Alignment:
Q  111 caaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtccc 210  Q
    ||||||| | ||||| ||| |||||||||| |||||||| ||||||| |||||| || |||| |||||||||||| ||| ||||||||||| | ||| |     
T  35160480 caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggctctgagggttca 35160579  T
Q  211 acacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 265  Q
    ||||  || || ||||| |||||||| || | |||||| ||||||||||||||||    
T  35160580 acacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 35160634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 265
Target Start/End: Original strand, 35154071 - 35154243
Alignment:
Q  93 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct 192  Q
    |||||||||||  |||||||||||| | ||||||||  |||||||||| || ||||| |||||||  ||||| || ||||  |||||    || ||||||    
T  35154071 agtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtctctccaagtagtgcttgcaatcatcgct 35154170  T
Q  193 gctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 265  Q
    ||||||||| | ||| ||||||| || || |||||  ||||||| | || ||||||  |  ||||||||||||    
T  35154171 gctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaact 35154243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 15555098 - 15555156
Alignment:
Q  178 ctcagcatgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcct 236  Q
    |||||||| ||||||||||||||| | ||| |||||| ||| |||||||| ||||||||    
T  15555098 ctcagcatcatcgctgctggctctgagggttccacacagcaacaacttctcgacttcct 15555156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 265
Target Start/End: Complemental strand, 9677807 - 9677635
Alignment:
Q  93 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct 192  Q
    |||||||||||   ||||||||||| | ||||||||| ||||||| |||||| |||||||||| | |||||| || |||| ||| ||||| || ||||||    
T  9677807 agtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgct 9677708  T
Q  193 gctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 265  Q
    ||||||||| | ||||| || |  || || ||||| |||||||| || | |||||| |  |||||||||||||    
T  9677707 gctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaact 9677635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 265
Target Start/End: Complemental strand, 9693546 - 9693376
Alignment:
Q  95 tttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgc 194  Q
    |||||||||  |||||||||||| | ||||||||| ||||||| || ||  |||||||||| | |||||| || |||| ||| |||||||| |||||||     
T  9693546 tttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgt 9693447  T
Q  195 tggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 265  Q
    ||||||| | ||||| || |  || || ||||| |||||||| || | |||||| |  |||||||||||||    
T  9693446 tggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaact 9693376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 20154380 - 20154488
Alignment:
Q  106 atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatg 205  Q
    |||||||||||| ||||||  ||||||||||| || ||||| || ||||||| | |||| || |||| |||| ||||| | | ||||||||||||| | |    
T  20154380 atcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaag 20154479  T
Q  206 gtcccacac 214  Q
    |||||||||    
T  20154480 gtcccacac 20154488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University