View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_high_102 (Length: 251)
Name: NF0583_high_102
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_102 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 36198867 - 36198633
Alignment:
| Q |
10 |
aataatatctgctctaatcaacttgcttaagcttaatttatgaaacacttgattgatactttcttcggttatatcattgctcgtatatacatcgcatgcc |
109 |
Q |
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| T |
36198867 |
aataatatctgctctaatcaacttgcttaagcttaagttatgaaacacttgattgatactttcttcggttaccacattgctcgtatatacatcgcttgac |
36198768 |
T |
|
| Q |
110 |
ttgaaatcctgaagaacgggacatccatcaagaagcaacaaaatctctcgttcatcaacaaacataacgcggtccaaatgaagggtttttagcaatggaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36198767 |
ttgaaatcctgaagaacgggacatccatcaagaagcaacaaaatctctcgttcatcaacaaacataacgcggtccaaatgaagggtttttagcaatggaa |
36198668 |
T |
|
| Q |
210 |
atccaaatccaactgaagaaaacgaaaaacccttt |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36198667 |
atccaaatccaactgaagaaaacgaaaaacccttt |
36198633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 35767656 - 35767606
Alignment:
| Q |
190 |
aagggtttttagcaatggaaatccaaatccaactgaagaaaacgaaaaacc |
240 |
Q |
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| T |
35767656 |
aagggttttgagtgatggaaatccaaatccaattgaagaaaaagaaaaacc |
35767606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 1722885 - 1722947
Alignment:
| Q |
175 |
aacgcggtccaaatgaagggtttttagcaatggaaatccaaatccaactgaagaaaacgaaaa |
237 |
Q |
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| T |
1722885 |
aacgcggttcaaatgaagggttttcagcaagggaaatccaaatccagtagaagaaaaagaaaa |
1722947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 1722768 - 1722801
Alignment:
| Q |
10 |
aataatatctgctctaatcaacttgcttaagctt |
43 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
1722768 |
aataatatctgccctaatcaacttgcttaagctt |
1722801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 28450169 - 28450225
Alignment:
| Q |
96 |
atacatcgcatgccttgaaatcctgaagaacgggacatccatcaagaagcaacaaaa |
152 |
Q |
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|||||| ||||||||||||||||| ||| || ||||||||| | || |||||||||| |
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| T |
28450169 |
atacatggcatgccttgaaatcctcaaggacaggacatccagcgagtagcaacaaaa |
28450225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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