View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_high_116 (Length: 227)
Name: NF0583_high_116
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_116 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 1755711 - 1755527
Alignment:
| Q |
21 |
actaaatagatatgactgattcaccaaaacaaaagtggtgtggtaaattgtcaggaaagtgtgatgttttgcaatgttatcgccatctgttgcagccttt |
120 |
Q |
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| T |
1755711 |
actaaatagatatgactgattcaccaaaacaaaagtggtgtggtaaattgtcaggaaagtgtgatgttttgcaatgttatcgccatctgttgcagccttt |
1755612 |
T |
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| Q |
121 |
aaggcagggaagaggatcaacaacaagcataataataacgagacactggctacttgatcgaatctttcttggtcgttaaaattgt |
205 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1755611 |
aaggcagggaagaggatcagcaacaagcataataataacgagacactggctacttgatcgaatctttcttggtcgttaaaattgt |
1755527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 1766039 - 1766223
Alignment:
| Q |
21 |
actaaatagatatgactgattcaccaaaacaaaagtggtgtggtaaattgtcaggaaagtgtgatgttttgcaatgttatcgccatctgttgcagccttt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1766039 |
actaaatagatatgactgattcaccaaaacaaaagtggtgtggtaaattgtcaggaaagtgtgatgttttgcaatgttatcgccatctgttgcagccttt |
1766138 |
T |
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| Q |
121 |
aaggcagggaagaggatcaacaacaagcataataataacgagacactggctacttgatcgaatctttcttggtcgttaaaattgt |
205 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1766139 |
aaggcagggaagaggatcagcaacaagcataataataacgagacactggctacttgatcgaatctttcttggtcgttaaaattgt |
1766223 |
T |
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