View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_high_119 (Length: 219)
Name: NF0583_high_119
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_119 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 725949 - 725815
Alignment:
| Q |
1 |
atctatcatcattcaaattccatattttaacttcattttgtctctctatacttatcaaaatgaagaaaattatcatattctcgcattgattggataaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
725949 |
atctatcatcattcaaattccatattttaacttcattttgtctctctatacttaacaaaatgaagaaaattatcatattcttgcattgattggataaaca |
725850 |
T |
|
| Q |
101 |
gcttaattaagcacctatagcataagtatttttat |
135 |
Q |
| |
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|
| T |
725849 |
gcttaattaagcacctatagcataagtatttttat |
725815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 39866923 - 39866886
Alignment:
| Q |
89 |
attggataaacagcttaattaagcacctatagcataag |
126 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
39866923 |
attggataaacaacttaattaagcacctatagcataag |
39866886 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 11493871 - 11493908
Alignment:
| Q |
90 |
ttggataaacagcttaattaagcacctatagcataagt |
127 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
11493871 |
ttggataaacagcttaattaagcacttatagtataagt |
11493908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 9316488 - 9316523
Alignment:
| Q |
90 |
ttggataaacagcttaattaagcacctatagcataa |
125 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
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|
| T |
9316488 |
ttggataaacagcttaattaagcacttatagcataa |
9316523 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 29794108 - 29794065
Alignment:
| Q |
90 |
ttggataaacagcttaattaagcacctatagcataagtattttt |
133 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
29794108 |
ttggataaacagcttaattaagcgcttatagcataagtgttttt |
29794065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 29665933 - 29665897
Alignment:
| Q |
90 |
ttggataaacagcttaattaagcacctatagcataag |
126 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
29665933 |
ttggataaacagcttaattaaacacttatagcataag |
29665897 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 28702641 - 28702678
Alignment:
| Q |
90 |
ttggataaacagcttaattaagcacctatagcataagt |
127 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
28702641 |
ttggataaacaacttaattaagcacttatagcataagt |
28702678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 11393552 - 11393515
Alignment:
| Q |
90 |
ttggataaacagcttaattaagcacctatagcataagt |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11393552 |
ttggataaacagcttaattaagcacttatagcacaagt |
11393515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 11410213 - 11410176
Alignment:
| Q |
90 |
ttggataaacagcttaattaagcacctatagcataagt |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11410213 |
ttggataaacagcttaattaagcacttatagcacaagt |
11410176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 43635283 - 43635250
Alignment:
| Q |
93 |
gataaacagcttaattaagcacctatagcataag |
126 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
43635283 |
gataaacagcttaattaagcacttatagcataag |
43635250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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