View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_high_120 (Length: 214)
Name: NF0583_high_120
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_120 |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 12743464 - 12743404
Alignment:
| Q |
79 |
agatcgaatacaacattgttttcatgaacacaaagtttttaacatctttctcttcttctat |
139 |
Q |
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| T |
12743464 |
agatcgaatacaacattgttttcatgaacacaaagtttttaacatctttctcttcctctat |
12743404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12744893 - 12744830
Alignment:
| Q |
1 |
tacaacctgacatatatattgagaaatgttcggttaacgagtagcgtgcaacattatctgtttt |
64 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12744893 |
tacaacttgacatatatattgagaaatgttcggttaacgaggagcgtgcaacattatctgtttt |
12744830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 12755295 - 12755355
Alignment:
| Q |
77 |
agagatcgaatacaacattgttttcatgaacacaaagtttttaacatctttctcttcttctat |
139 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
12755295 |
agagatcgaatacaacattgtttttatgaacac--agtttttaacatctttctcttcctctat |
12755355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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