View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_high_121 (Length: 203)
Name: NF0583_high_121
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_121 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 6191334 - 6191536
Alignment:
| Q |
1 |
ctgattgcttggtctcatcaaaattgtctttcccatcatagttgttttcacttgacttgttatcagaagtgttgccttcaaacgctgacattaccggcag |
100 |
Q |
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| T |
6191334 |
ctgattgcttggtctcatcaaaattgtctttcccatcatagttgttttcacttgacttgttatcagaagtgttgccttcaaacgctgacattaccggcag |
6191433 |
T |
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| Q |
101 |
atgcaatccagcttcagattcagttggtcttccttcatttcctttgctttcgaactgcacaatgaaaaagcattagtcaagggctcaaggcaagaggagt |
200 |
Q |
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| T |
6191434 |
atacaatccagcttcagattcagttggtcttccttcatttcctttgctttcgaactgcacaatgaaaaagcattagtcaagggctcaaggcaagaggagt |
6191533 |
T |
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| Q |
201 |
ggg |
203 |
Q |
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||| |
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| T |
6191534 |
ggg |
6191536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 6184351 - 6184514
Alignment:
| Q |
8 |
cttggtctcatcaaaattgtctttcccatcatagttgttttcacttgacttgttatcagaagtgttgccttcaaacgctgacattaccggcagatgcaat |
107 |
Q |
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| T |
6184351 |
cttggtctcatcacaattgtctggcctatcgtagttgtttacacttgacttgttatcagaactttt---ttcaacagttgacactggagataaatgcaat |
6184447 |
T |
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| Q |
108 |
ccagcttcagattcagttggtcttccttcatttcctttgctttcgaactgcacaatgaaaaagcatt |
174 |
Q |
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| T |
6184448 |
gcagcttcagattcaattggtcttccttcatttccagtgcttttgaactgcacaatgaaaaagcatt |
6184514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 37454267 - 37454084
Alignment:
| Q |
2 |
tgattgcttggtctcatca---aaattgtctttcccatcatagttgttttcacttgacttgttatcagaagtgttgccttcaaacgctgacattaccggc |
98 |
Q |
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||||||||||||||||||| | |||||||| || |||||| |||||||||||| ||||||||||||| | || |||| | ||||||||||||||| |
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| T |
37454267 |
tgattgcttggtctcatcatcaatattgtcttgccaatcataattgttttcacttaacttgttatcagatgcattttcttcgaccgctgacattaccgga |
37454168 |
T |
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| Q |
99 |
agatgcaatccagcttcagattcagttggtcttccttcatttcctttgctttcgaactgcacaatgaaaaagcattagtcaagg |
182 |
Q |
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| T |
37454167 |
agatgcaatccagcttcagattctgttggtcttccttcaattcctttgctttctaactacacaatgaaaaagaattggtcaagg |
37454084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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