View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_high_16 (Length: 563)
Name: NF0583_high_16
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 467
Target Start/End: Complemental strand, 31612718 - 31612260
Alignment:
| Q |
9 |
gagatgaaggggaggacaaagaggaggaatacaagggagggaattgaggaggctatgtatagttcgcgccatcttgggaagatgtttgctatgcctgaga |
108 |
Q |
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| T |
31612718 |
gagatgaaggggaggacaaagaggaggaatacaagggagggaattgaggaggctatgtatagttcgcgccatcttgggaagatgtttgctatgcctgaga |
31612619 |
T |
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| Q |
109 |
ggactgcgatgcctgttgagaagaagtagaaggtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagag |
208 |
Q |
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| T |
31612618 |
ggactgcgatgcctgttgagaagaagtagaaggtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagag |
31612519 |
T |
|
| Q |
209 |
gccgacgccacctgtgctgaaaccagtgaggaagcggaggaagaagtaggagatgtaattgggggagaaggctgttaggatgccgaagatgctgtttagt |
308 |
Q |
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| T |
31612518 |
gccgacgccacctgtgctgaaaccagtgaggaagcggaggaagaagtaggagatgtaattgggggagaaggctgttaggatgctgaagatgctgtttagg |
31612419 |
T |
|
| Q |
309 |
atgcaaactatcgtgagagatccttttcgtccaagaaacgaatcagagagatgaccaaggattccagcccctacacaaggttaatagataagataactac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612418 |
atgcaaactatcgtgagagatccttttcgtccaagaaacgaatcagagagatgaccaaagattccagcccctacacaaggttaatagataagataactac |
31612319 |
T |
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| Q |
409 |
atataaaaaacatggatgatattaaaattcagcatcaaattgtataggtagaaaaaagt |
467 |
Q |
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| T |
31612318 |
atataaaaaacatggatgatattaaaattcaacatcaaattgtataggcagaaaaaagt |
31612260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 249
Target Start/End: Original strand, 34419052 - 34419175
Alignment:
| Q |
126 |
gagaagaagtagaaggtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgc |
225 |
Q |
| |
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||||||||||||||||| ||||| ||||| ||||| ||| ||||| | |||||| |||||||| ||||||||||| ||||| || || || |||| |
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| T |
34419052 |
gagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggcgcaaaggccaacaccgccagtgc |
34419151 |
T |
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| Q |
226 |
tgaaaccagtgaggaagcggagga |
249 |
Q |
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||||||| ||||||| |||||||| |
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| T |
34419152 |
tgaaaccggtgaggaggcggagga |
34419175 |
T |
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