View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_high_2 (Length: 844)
Name: NF0583_high_2
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 326 - 836
Target Start/End: Complemental strand, 28343857 - 28343344
Alignment:
| Q |
326 |
ctttatgtactatgattagttatgaatgctaaccttttgtatttgtcttttatgtcctgcattgcaagttcagatgacttttatt---tattaaaaaaca |
422 |
Q |
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| T |
28343857 |
ctttatgtactatgattagttatgaatgctaactttttgtatttgtcttttatgtcctgcattgcaagttcagatgacttttattatttattaaaaaaca |
28343758 |
T |
|
| Q |
423 |
atactctacttggtcacatcacttaacataaaatagttttataagtttaactaaaacattttgtaaatacttatgttactatagagtatgtccaacttta |
522 |
Q |
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| T |
28343757 |
atactctacttggtcacatcacttaacataaaatagttttataagtttaactaaaacattttgtaaatacttatgttactatagagtatgtccaacttta |
28343658 |
T |
|
| Q |
523 |
gacatattataaactatttttataagtttttctaaacacctttgtagatacttatgttatactagagtaagtccaaatactgtaccaattattgagactc |
622 |
Q |
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| T |
28343657 |
tacatattataaactatttttataagtttttctaaacacctttgtagatacttatgttatactagagtaagtccaaatactgtaccaattattgagactc |
28343558 |
T |
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| Q |
623 |
ttccatttgtattttgttccaattaattaccaactatactgagaacatttattaataaatatgctaatgtcactacttttaattaaatcaatttaattaa |
722 |
Q |
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| T |
28343557 |
ttccatttgtattttgttccaattaattaccaactatactgagaacatttattaataaatatgctaatgtcactacttttaattaaatcaatttaattaa |
28343458 |
T |
|
| Q |
723 |
taaagcattgaactcaacgttgcatatagttgagctaaactttgacaacaacaccatcattgtttgcttcaattccttctctaccttccatccatggcta |
822 |
Q |
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| T |
28343457 |
taaagcattgaactcaacgttgcatatagttgagctaaactttgacaacaacaccatcattgtttgcttcaattccttctctaccttccatccatggcta |
28343358 |
T |
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| Q |
823 |
tcttcacctatgct |
836 |
Q |
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| T |
28343357 |
tcttcacctatgct |
28343344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 28344090 - 28343924
Alignment:
| Q |
93 |
agattaacttgccaaagtatatacactttgtcttgttccttttatctcattaaatatgtcaatttgacaatgtcttcaaatatataataaaaacaatgtg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28344090 |
agattaacttgccaaagtatatacactttgtcttgttccttttatctcattaaatatgtcaatttgacaatgtcttcaaatatataataaaaacaatgtg |
28343991 |
T |
|
| Q |
193 |
ccggccgattgagcatttgctctcagaaaatattagtgagagttggactaattcaactaattatctg |
259 |
Q |
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| T |
28343990 |
ccggccgattgagcatttgctctcagaaaatattagtgagagttggactaattcaattaattatctg |
28343924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 449 - 611
Target Start/End: Complemental strand, 28336633 - 28336467
Alignment:
| Q |
449 |
cataaaatagttttataagtttaactaaaacattttgtaaatacttatgttact-------atagagtatgtccaactttagacatattataaactattt |
541 |
Q |
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|||||||||||||||||| |||| ||||| |||||||||| ||||||||||||| ||||||| ||||||| | |||||||||||||||||||| |
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| T |
28336633 |
cataaaatagttttataaatttacctaaa-cattttgtaagtacttatgttactctagactatagagtctgtccaaat--agacatattataaactattt |
28336537 |
T |
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| Q |
542 |
ttataagtttttctaaacacctttgtagatacttatgttatactagagtaagtccaaatactgtaccaat |
611 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
28336536 |
ttataaggttttctaaacacctttgtagatacctatgttatactagaataagtccaaatacagtaccaat |
28336467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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