View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_high_22 (Length: 498)

Name: NF0583_high_22
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_high_22
NF0583_high_22
[»] chr6 (4 HSPs)
chr6 (74-469)||(4846500-4846918)
chr6 (11-44)||(21690740-21690773)
chr6 (11-43)||(7915870-7915902)
chr6 (8-44)||(8001580-8001616)
[»] scaffold0047 (1 HSPs)
scaffold0047 (11-44)||(12665-12698)
[»] chr7 (3 HSPs)
chr7 (11-44)||(36277259-36277292)
chr7 (11-44)||(2544480-2544513)
chr7 (11-40)||(42985156-42985185)
[»] chr2 (6 HSPs)
chr2 (11-44)||(37812531-37812564)
chr2 (11-44)||(94053-94086)
chr2 (11-44)||(10585001-10585034)
chr2 (11-44)||(19571007-19571040)
chr2 (11-44)||(37812301-37812334)
chr2 (13-42)||(42895267-42895296)
[»] scaffold0766 (1 HSPs)
scaffold0766 (11-44)||(6292-6325)
[»] chr5 (3 HSPs)
chr5 (11-44)||(24531617-24531650)
chr5 (11-44)||(25258334-25258367)
chr5 (11-44)||(25322124-25322157)
[»] chr4 (2 HSPs)
chr4 (11-44)||(35609523-35609556)
chr4 (11-44)||(53814962-53814995)
[»] chr1 (2 HSPs)
chr1 (11-44)||(25145518-25145551)
chr1 (10-42)||(32783085-32783117)
[»] chr3 (1 HSPs)
chr3 (11-43)||(34610580-34610612)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 74 - 469
Target Start/End: Complemental strand, 4846918 - 4846500
Alignment:
Q  74 agtttgaactccgaatcttacatgtattgcaaattgccc-catttataaacaaattgttattgttatgctatcttctatatgatgatataggattctaac 172  Q
    |||||||||||  ||||||  ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4846918 agtttgaactctaaatcttgtatgtattgcaaattgtcctcatttataaataaattgttattgttatgctatcttctatatgatgatgtaggattctaac 4846819  T
Q  173 aatatgaaatcaaatttactattctnnnnnnnnnttattgccggatcaaaatgataatataatagnnnnnnnnnnnnnnn-tccaattccttaattgtat 271  Q
    ||||||||||||||||||| |||||         | |||||||||||||||||||||||||||||                ||||||||||||||| |||    
T  4846818 aatatgaaatcaaatttaccattctaaaaaaaaatcattgccggatcaaaatgataatataatagaaaaaaacaaaaaaaatccaattccttaattttat 4846719  T
Q  272 tttcctattccaaaacgaagagtgtagctctattaaattggaccaacattttaaaagcaacatgtgatacaatctgatagcatgcatctattctttgatg 371  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4846718 tttcctattccaaaacgaagagtgtagccctattaaattggaccaacattttaaaagcaacatgtgatacaatctgatagcatgcatctattctttgatg 4846619  T
Q  372 aatgaaaatgt---------------------gttgtccgctttatttataatgtgggacagcttatcactctatgtatgtttcacaaagcacatgacta 450  Q
    |||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4846618 aatgaaaatgtgttgcagtacattgaaaatgtgttgtccgctttatttataatgtgggacagcttatcactctatgtatgtttcacaaagcacatgacta 4846519  T
Q  451 acaatttttgtgagtatca 469  Q
    |||||||||||||||||||    
T  4846518 acaatttttgtgagtatca 4846500  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 21690773 - 21690740
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    ||||||||| ||||||||||||||||||||||||    
T  21690773 acaaaatcggcttgtgaggtgaggattgccccca 21690740  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 7915902 - 7915870
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccc 43  Q
    ||||||||| |||||||||||||||||||||||    
T  7915902 acaaaatcggcttgtgaggtgaggattgccccc 7915870  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 8001580 - 8001616
Alignment:
Q  8 ccaacaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||||||||||||| |||||||| |||||||||||    
T  8001580 ccaacaaaatcgacttatgaggtgaagattgccccca 8001616  T

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Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 12698 - 12665
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    ||||||||||||||||||||||||||||||||||    
T  12698 acaaaatcgacttgtgaggtgaggattgccccca 12665  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 36277259 - 36277292
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    ||||||||||||||||||||||||||||||||||    
T  36277259 acaaaatcgacttgtgaggtgaggattgccccca 36277292  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 2544480 - 2544513
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||| |||||||||||||||||||||||||||    
T  2544480 acaaaaccgacttgtgaggtgaggattgccccca 2544513  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 42985156 - 42985185
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgcc 40  Q
    ||||||||||||||||||||||||||||||    
T  42985156 acaaaatcgacttgtgaggtgaggattgcc 42985185  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 37812531 - 37812564
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    ||||||||||||||||||||||||||||||||||    
T  37812531 acaaaatcgacttgtgaggtgaggattgccccca 37812564  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 94053 - 94086
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||| |||||||||||||||||||||||||||    
T  94053 acaaaaccgacttgtgaggtgaggattgccccca 94086  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 10585001 - 10585034
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||| |||||||||||||||||||||||||||    
T  10585001 acaaaaccgacttgtgaggtgaggattgccccca 10585034  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 19571007 - 19571040
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  19571007 acaaaatcgacttatgaggtgaggattgccccca 19571040  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 37812301 - 37812334
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||||||||||||||||||||||||| |||||    
T  37812301 acaaaatcgacttgtgaggtgaggattgtcccca 37812334  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 42895296 - 42895267
Alignment:
Q  13 aaaatcgacttgtgaggtgaggattgcccc 42  Q
    ||||||||||||||||||||||||||||||    
T  42895296 aaaatcgacttgtgaggtgaggattgcccc 42895267  T

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Target: scaffold0766 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 6325 - 6292
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    ||||||||| ||||||||||||||||||||||||    
T  6325 acaaaatcggcttgtgaggtgaggattgccccca 6292  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 24531650 - 24531617
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    ||||||||| ||||||||||||||||||||||||    
T  24531650 acaaaatcggcttgtgaggtgaggattgccccca 24531617  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 25258334 - 25258367
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||| |||||||||||||||||||||||||||    
T  25258334 acaaaaccgacttgtgaggtgaggattgccccca 25258367  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 25322124 - 25322157
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||| |||||||||||||||||||||||||||    
T  25322124 acaaaaccgacttgtgaggtgaggattgccccca 25322157  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 35609523 - 35609556
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||| |||||||||||||||||||||||||||    
T  35609523 acaaaaccgacttgtgaggtgaggattgccccca 35609556  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 53814962 - 53814995
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||| |||||||||||||||||||||||||||    
T  53814962 acaaaaccgacttgtgaggtgaggattgccccca 53814995  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 25145518 - 25145551
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccca 44  Q
    |||||| |||||||||||||||||||||||||||    
T  25145518 acaaaaccgacttgtgaggtgaggattgccccca 25145551  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 32783085 - 32783117
Alignment:
Q  10 aacaaaatcgacttgtgaggtgaggattgcccc 42  Q
    ||||||||||||||||||||||| |||||||||    
T  32783085 aacaaaatcgacttgtgaggtgatgattgcccc 32783117  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 34610612 - 34610580
Alignment:
Q  11 acaaaatcgacttgtgaggtgaggattgccccc 43  Q
    |||||| ||||||||||||||||||||||||||    
T  34610612 acaaaaccgacttgtgaggtgaggattgccccc 34610580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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