View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_high_28 (Length: 456)
Name: NF0583_high_28
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 23 - 427
Target Start/End: Original strand, 571833 - 572237
Alignment:
| Q |
23 |
atcatcaataatcccaaattacaatgactaaccagatcctatgtgttacaaatgcttttcagcccctaattgcaaaatgtaaacacaactacaacaaaca |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
571833 |
atcatcaataatcccaaattacaatgactaaccagatcctatgtgttacaaatacttttctgcccctaattgcaaaatgtaaacacaactacaacaaaca |
571932 |
T |
|
| Q |
123 |
aactatcataattcagagcttagagagatttgaaggtggctcaatgttatcaaacatgtcctctggaaaatcatcaaagaacctatcaattttgcaactc |
222 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
571933 |
aactatcataattcagagcttagagaaatttgaaggtggctcaatgttatcaaacatgtcctctggaaaatcatcaaagaacctatcaattttgcaactc |
572032 |
T |
|
| Q |
223 |
cctgatggctcnnnnnnnggaaccattccaaactcagatgtttccaagggaccaaacacatcaaataaattgtgttcatcaactctttccattggaaaag |
322 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572033 |
tctgatggctcaaaaaaaggaaccattccaaactcagatgtttccaagggaccaaacacatcaaataaattgtgttcatcaactctttccattggaaaag |
572132 |
T |
|
| Q |
323 |
taaaatcagtatcgagttctggaatctgaggaaatccaatgtattcagtgcttttatagctctgatcaaaaggggttaactcttgttcaacgtaattctc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572133 |
taaaatcagtatcgagttctggaatctgaggaaatccaatgtattcagtgcttttatagctctgatcaaaaggggttaactcttgttcaacgtaattctc |
572232 |
T |
|
| Q |
423 |
gtcga |
427 |
Q |
| |
|
||||| |
|
|
| T |
572233 |
gtcga |
572237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1310 times since January 2019
Visitors: 3844