View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_high_36 (Length: 425)
Name: NF0583_high_36
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 97 - 417
Target Start/End: Original strand, 4152599 - 4152919
Alignment:
| Q |
97 |
taactctccagtccaatacatacaaaatatagaaggatcatatgcatatgccaaacaagaacaatttgccaaacaatctgctccacacttatcttgatca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4152599 |
taactctccagtccaatacatacaaaatatagaaggatcatatgcatatgccaaacaagaacaatttgccaaacaatctgctccacacttatcttgatca |
4152698 |
T |
|
| Q |
197 |
gcattatttgttctcacattaaaatcaggaggtttcatattatgatacaccttaaatccatcttgtttaactatacttgatccattcttcaccatctcac |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4152699 |
gcattatttgttctcacattaaaatcaggaggtttcatattatgatacaccttaaatccatcttgtttaactatacttgatccattcttcaccatctcac |
4152798 |
T |
|
| Q |
297 |
acttcaagttcattccttctttcctcacacaaccattagtccaattgcctaaactccattccacagaattctttggctcaaacccatcaaaacaactaca |
396 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4152799 |
actttaagttcattccttctttcctcacacaaccattagtccaattgcctaaactccattccacagaattctttggctcaaacccatcaaaacaactaca |
4152898 |
T |
|
| Q |
397 |
aattggcacagtagaattatc |
417 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4152899 |
aattggcacagtagaattatc |
4152919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 97 - 417
Target Start/End: Original strand, 4123252 - 4123569
Alignment:
| Q |
97 |
taactctccagtccaatacatacaaaatatagaaggatcatatgcatatgccaaacaagaacaatttgccaaacaatctgctccacacttatcttgatca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4123252 |
taactctccagtccaatacatacaaaatatagaaggatcatatgcatatgccaaacaagaacaatttgccaaacaatcttctccacacttatctatatca |
4123351 |
T |
|
| Q |
197 |
gcattatttgttctcacattaaaatcaggaggtttcatattatgatacaccttaaatccatcttgtttaactatacttgatccattcttcaccatctcac |
296 |
Q |
| |
|
|||| | |||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
4123352 |
acatt---taatctctcagcaaaatcaggaactttcatattatgatacaccttaaatccatcttgcttaactacagttgatccattcttcaccatctcac |
4123448 |
T |
|
| Q |
297 |
acttcaagttcattccttctttcctcacacaaccattagtccaattgcctaaactccattccacagaattctttggctcaaacccatcaaaacaactaca |
396 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4123449 |
acttcaagttcaatccctctttcctcacacaaccattagtccaatttcctaaactccattccacagaattctttgcctcaaacccatcaaaacaactaca |
4123548 |
T |
|
| Q |
397 |
aattggcacagtagaattatc |
417 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
4123549 |
aattggcacaacagaattatc |
4123569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 108 - 417
Target Start/End: Original strand, 4144610 - 4144916
Alignment:
| Q |
108 |
tccaatacatacaaaatatagaaggatcatatgcatatgccaaacaagaacaatttgccaaacaatctgctccacacttatcttgatcagcattatttgt |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| | || || |
|
|
| T |
4144610 |
tccaatacatacaacctatagaaggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagc---tga |
4144706 |
T |
|
| Q |
208 |
tctcacattaaaatcaggaggtttcatattatgatacaccttaaatccatcttgtttaactatacttgatccattcttcaccatctcacacttcaagttc |
307 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| |||| |||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4144707 |
tctctcattaaaatcaggaggtttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttc |
4144806 |
T |
|
| Q |
308 |
attccttctttcctcacacaaccattagtccaattgcctaaactccattccacagaattctttggctcaaacccatcaaaacaactacaaattggcacag |
407 |
Q |
| |
|
| ||||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
4144807 |
aatccttctgttctcacacaaccattagtccaatttcctaaactccactccaccgaattctttggctgaaacccatcaaaacaactacaaattggtacac |
4144906 |
T |
|
| Q |
408 |
tagaattatc |
417 |
Q |
| |
|
|||||||||| |
|
|
| T |
4144907 |
tagaattatc |
4144916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 108 - 399
Target Start/End: Original strand, 4162963 - 4163251
Alignment:
| Q |
108 |
tccaatacatacaaaatatagaaggatcatatgcatatgccaaacaagaacaatttgccaaacaatctgctccacacttatcttgatcagcattatttgt |
207 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| || | ||| || |
|
|
| T |
4162963 |
tccaatacatacaacgtataaaaggatcatatgcataagccaaacaagaacaatttgccaaacaatctgttctacacttatctcgactaacatc---tga |
4163059 |
T |
|
| Q |
208 |
tctcacattaaaatcaggaggtttcatattatgatacaccttaaatccatcttgtttaactatacttgatccattcttcaccatctcacacttcaagttc |
307 |
Q |
| |
|
|||| || |||||||||||||||| |||| ||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4163060 |
tctctcagcaaaatcaggaggtttcgtattgggatgcaccaaaaatttatcttgtttaactacgcttgatccattcttcaccatctcacacttcaagttc |
4163159 |
T |
|
| Q |
308 |
attccttctttcctcacacaaccattagtccaattgcctaaactccattccacagaattctttggctcaaacccatcaaaacaactacaaat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | ||||||| ||||| ||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4163160 |
attccttctttcctcacacaaccattagtccaattccttgaactccactccaccaaattctttggctcaaaccctttaaaacaactacaaat |
4163251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 101 - 399
Target Start/End: Original strand, 4133798 - 4134093
Alignment:
| Q |
101 |
tctccagtccaatacatacaaaatatagaaggatcatatgcatatgccaaacaagaacaatttgccaaacaatctgctccacacttatcttgatcagcat |
200 |
Q |
| |
|
|||||| ||||||||| ||| |||| || |||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||| | || |
|
|
| T |
4133798 |
tctccactccaatacacgcaacctatataacgatcatatgcatatgccaaacaagaacaatttaccaaacaatctgttctacatttatcttgattaccag |
4133897 |
T |
|
| Q |
201 |
tatttgttctcacattaaaatcaggaggtttcatattatgatacaccttaaatccatcttgtttaactatacttgatccattcttcaccatctcacactt |
300 |
Q |
| |
|
|| |||| |||||||||||||| ||||||||| ||| |||| ||| ||||||||||||| | | ||||||| |||||| |||||||||||| |
|
|
| T |
4133898 |
c---tgatctctcattaaaatcaggaactttcatattccgattcaccaaaaaaccatcttgtttaaattcatttgatccggtcttcaacatctcacactt |
4133994 |
T |
|
| Q |
301 |
caagttcattccttctttcctcacacaaccattagtccaattgcctaaactccattccacagaattctttggctcaaacccatcaaaacaactacaaat |
399 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4133995 |
caagttcattcctgctgtcctcacacaaccattagtccaattccttgaactccattccaccaaattctttggctcaaaccctttaaaacaactacaaat |
4134093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1450 times since January 2019
Visitors: 3846