View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_high_4 (Length: 800)

Name: NF0583_high_4
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_high_4
NF0583_high_4
[»] chr5 (1 HSPs)
chr5 (13-758)||(5216779-5217506)


Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 13 - 758
Target Start/End: Complemental strand, 5217506 - 5216779
Alignment:
Q  13 aatatcccatacttgtttgcactatcaacctgtatatattgtcggcaacattcaatacaattctcattataattaaataaatgttactctttttcataag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  5217506 aatatcccatacttgtttgcactatcaacctgtatatattgtcggcaacattcaagaccattctcattataattaaataaatgttactctttttcataag 5217407  T
Q  113 aaaagtcaaaatgctttggttactagtaacttatggttactaacttctttagcaacnnnnnnnnnnnnnnatgatagaaaaacccataatatattatgtc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||| |||    
T  5217406 aaaagtcaaaatgctttggttactagtaacttatggttactaacttctttagcaacttttttttttttt-atgatagaaaaacccataatatattacgtc 5217308  T
Q  213 ataacactgacatttctaatgaaaaacgtctttggtgtccaccgcttctgataagtacaacatgacactgtcacaaataactatattaaatatatatttg 312  Q
    |||||||| ||||||||  |||||||||||||||||||||| |||||                 |||| |||||| ||||||||||||| ||||||||||    
T  5217307 ataacactaacatttctgttgaaaaacgtctttggtgtccaacgctt-----------------acaccgtcacagataactatattaagtatatatttg 5217225  T
Q  313 atattacgatggttatatctgaatcaaaatgatttgtcgtgaatttaaacataaactaaaatgatgtgcggtgatcttaaacaaaaactaaatagtgtta 412  Q
     ||| ||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||| ||||||||||||| ||  ||||||||||||    
T  5217224 gtatcacgatagttatatctgaatcaaagtgatttgtcgtgaacttaaacataagctaaaatgatctgcagtgatcttaaacataagttaaatagtgtta 5217125  T
Q  413 ttttttaaaattactatcggtgtcaatgtcgtatctggtgttccgtaggtttctgtacttcatatgtcttccaatttctaaactggtgtgtccttttttg 512  Q
    |||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5217124 ttttctaaaattactatgggtgtcgatgtcgtatctgatgttccgtaggtttctgtacttcatatgccttccaatttctaaactggtgtgtccttttttg 5217025  T
Q  513 gtacattttatgaataaaccgactctaatatgataacaggatgacgtcattttcagagaatacctaccaaattaaatgtctagatacataagaggcatga 612  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5217024 gtacattttatgaataaaccgactctaatttgataacaggatgacgtcattttcagagaatacctaccaaattaaatgtctatatacataagaggcatga 5216925  T
Q  613 tttattttgaagtttgcaaggtcactacaaaacaagacataaggaattaaataaattagagaattgtatcgaaccttcacaacagtgcagtctttacaag 712  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5216924 tttattttgaactttgcaaggtcactacaaaacaagacataaggaattaaataaattagagaattgtatcgaaccttcacaacagtgcagtctttacaag 5216825  T
Q  713 tattattatctatacaaaccctgccaattaacagaaaattaattac 758  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5216824 tattattatctatacaaaccctgccaattaacagaaaattaattac 5216779  T

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