View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_high_49 (Length: 357)

Name: NF0583_high_49
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_high_49
NF0583_high_49
[»] chr6 (9 HSPs)
chr6 (10-329)||(33383644-33383963)
chr6 (10-213)||(31565115-31565318)
chr6 (14-213)||(33414303-33414502)
chr6 (14-167)||(33292802-33292955)
chr6 (239-323)||(33269184-33269268)
chr6 (14-133)||(33269355-33269475)
chr6 (108-199)||(33258067-33258158)
chr6 (116-213)||(33351400-33351497)
chr6 (12-81)||(33394918-33394988)
[»] chr2 (1 HSPs)
chr2 (9-212)||(17445699-17445899)
[»] scaffold0428 (1 HSPs)
scaffold0428 (108-199)||(2188-2279)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 33383963 - 33383644
Alignment:
Q  10 gcagagagaagaccttgctttgaaacccgagaacataacagagaaaattgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33383963 gcagagagaagaccttgctttgaaacccgagaacataacagagaaaattgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcag 33383864  T
Q  110 cctttcattaaggatgacagtgtttcagtgaaagacttgatgaggcaaagtatagctgccattggcgagaacattaaagtggggcgttttgttcggttca 209  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  33383863 cctttcattaaggatgacagtgtttcagtgaaagacttggtgaggcaaagtatagctgccattggcgagaacattaaagctgggcgttttgttcggttca 33383764  T
Q  210 ctctgtgaaacaatcttggcaatagatcctggaccacagcagcacagctcatttgacggaagcattaggcaaactatatgtcggttttgtgcgatgtcaa 309  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33383763 ctctgtgaaacaaccttggcaatagatcctggaccacagcagcacagctcatttgacggaagcattaggcaaactatatgttggttttgtgcgatgtcaa 33383664  T
Q  310 gttaacaagtccatattact 329  Q
    ||||||||||||||||||||    
T  33383663 gttaacaagtccatattact 33383644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 31565115 - 31565318
Alignment:
Q  10 gcagagagaagaccttgctttgaaacccgagaacataacagagaaaattgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcag 109  Q
    ||||||||||||||||||||  ||| ||||||||| || ||| ||||||||||||||||||||||||||||| |||  ||| || |||||| || |||||    
T  31565115 gcagagagaagaccttgcttcaaaagccgagaacagaagagaaaaaattgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcag 31565214  T
Q  110 cctttcattaaggatgacagtgtttcagtgaaagacttgatgaggcaaagtatagctgccattggcgagaacattaaagtggggcgttttgttcggttca 209  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  31565215 cctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttca 31565314  T
Q  210 ctct 213  Q
    ||||    
T  31565315 ctct 31565318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 33414502 - 33414303
Alignment:
Q  14 agagaagaccttgctttgaaacccgagaacataacagagaaaattgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctt 113  Q
    ||||||||||||||||  |||||||||||||| | |||||||||||| ||||||||||||||||||||||||  ||| || |||||| || |||||||||    
T  33414502 agagaagaccttgcttcaaaacccgagaacattagagagaaaattgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagcctt 33414403  T
Q  114 tcattaaggatgacagtgtttcagtgaaagacttgatgaggcaaagtatagctgccattggcgagaacattaaagtggggcgttttgttcggttcactct 213  Q
    | ||||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  33414402 ttattaaggatgacagtgttgtagtgaaagacttggtgaggcaaagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttcactct 33414303  T

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Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 33292955 - 33292802
Alignment:
Q  14 agagaagaccttgctttgaaacccgagaacataacagagaaaattgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctt 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||  ||  |||||||| |||||||||    
T  33292955 agagaagaccttgctttgaaacccgagaacataagagagaaaattgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctt 33292856  T
Q  114 tcattaaggatgacagtgtttcagtgaaagacttgatgaggcaaagtatagctg 167  Q
    ||||||||||||||||||||||  |||||||||||  |||||||||||||||||    
T  33292855 tcattaaggatgacagtgtttctttgaaagacttggagaggcaaagtatagctg 33292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 33269268 - 33269184
Alignment:
Q  239 tggaccacagcagcacagctcatttgacggaagcattaggcaaactatatgtcggttttgtgcgatgtcaagttaacaagtccat 323  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  33269268 tggaccacagcagcacagctcatttgacggaagcataaggcgaactatatgttggttttgtacgatgtcaagttaacaagtccat 33269184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 33269475 - 33269355
Alignment:
Q  14 agagaagaccttgctttgaaacccgagaacataacagagaaaattgt-tgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcct 112  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||  ||| || |||||| || || |||||    
T  33269475 agagaagaccttgctttgaaacccgagaacattagagagaaaattgtctgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagcct 33269376  T
Q  113 ttcattaaggatgacagtgtt 133  Q
    || ||||||||||||||||||    
T  33269375 tttattaaggatgacagtgtt 33269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 33258158 - 33258067
Alignment:
Q  108 agcctttcattaaggatgacagtgtttcagtgaaagacttgatgaggcaaagtatagctgccattggcgagaacattaaagtggggcgtttt 199  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||| |||||| |||||||||| ||||||||    
T  33258158 agcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcgtttt 33258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 33351497 - 33351400
Alignment:
Q  116 attaaggatgacagtgtttcagtgaaagacttgatgaggcaaagtatagctgccattggcgagaacattaaagtggggcgttttgttcggttcactct 213  Q
    |||||||| |||||||||  ||||||||||||| ||||||||||||||||||  ||||| ||||||||||||| | ||||||||||||||||||||||    
T  33351497 attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaacattaaagcgcggcgttttgttcggttcactct 33351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 33394988 - 33394918
Alignment:
Q  12 agagagaagaccttgctttgaaacccgagaacataacagagaaaattgttga-gggaagaatctcaaagag 81  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||    
T  33394988 agagagaagaccttgctttgaaacccgggaacataagagagaaaatagttgaggggaagaatctcaaagag 33394918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 17445699 - 17445899
Alignment:
Q  9 agcagagagaagaccttgctttgaaacccgagaacataacagagaaaattgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagca 108  Q
    ||||||| ||||||||| ||| |||||||||||| |||| |||||||||||| |||||||| |||||||||||||||  ||| || |||||| || ||||    
T  17445699 agcagagggaagacctttcttcgaaacccgagaatataagagagaaaattgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagca 17445798  T
Q  109 gcctttcattaaggatgacagtgtttcagtgaaagacttgatgaggcaaagtatagctgccattggcgagaacattaaagtggggcgttttgttcggttc 208  Q
    ||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||||| ||||| |||    |||||||| ||||||||||| |||||    
T  17445799 gcctttcattaaggatgacagcgtttcagtgaaatatttggtgaggcaaagtatagctgctattggagag---tttaaagtgcggcgttttgttaggttc 17445895  T
Q  209 actc 212  Q
    ||||    
T  17445896 actc 17445899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 2279 - 2188
Alignment:
Q  108 agcctttcattaaggatgacagtgtttcagtgaaagacttgatgaggcaaagtatagctgccattggcgagaacattaaagtggggcgtttt 199  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||| |||||| |||||||||| ||||||||    
T  2279 agcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcgtttt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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