View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_high_52 (Length: 345)
Name: NF0583_high_52
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 36198190 - 36198519
Alignment:
| Q |
1 |
atcctgtgccacattctatctttcaaccctaccaaaaacgctgttaccacttccattctttccaagaggtggactcatctatggcgctgtgttcctatcc |
100 |
Q |
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| T |
36198190 |
atcctgtgccacattctatctttcaaccctaccaaaaacgctgttaccacttccattctttccaagaggtggactcatctatggcgctgtgttcctatcc |
36198289 |
T |
|
| Q |
101 |
tcgatttcacggatatcaaattgagagactgtgaatccattctcctattcaatcagtttgtcgactattttatgctctcgcgagaagccactggtaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36198290 |
tcgatttcacggatatcaaattgagagactgtgaatccattctcctattcaatcagttcgtcgactattttatgctctcgcgagaagccactggtaatca |
36198389 |
T |
|
| Q |
201 |
ttccatcgacagttttatcgtggacgttgaatatgctgctggtcgtaatcacgtcacatctcttagcattcccaatctcgcaaaatgggttaaccttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36198390 |
ttccatcgacagttttatcgtggacgttgaatatgctgctagtcgtaatcacgtcacatctcttagcattcccaatctcgcaaaatgggttaaccttgtt |
36198489 |
T |
|
| Q |
301 |
gttcaacgcaaagttaagcatcttcatctc |
330 |
Q |
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| T |
36198490 |
gttcaacgcaaagttaagaatcttcatctc |
36198519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 694704 - 694627
Alignment:
| Q |
134 |
aatccattctcctattcaatcagtttgtcgactattttatgctctcgcgagaagccactggtaatcattccatcgaca |
211 |
Q |
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| T |
694704 |
aatccattctccgattcaatcagtttgtctactctgttatgctctcgcgagaagccgctggtaataatttgatcgaca |
694627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 1012931 - 1012871
Alignment:
| Q |
269 |
ttcccaatctcgcaaaatgggttaaccttgttgttcaacgcaaagttaagcatcttcatct |
329 |
Q |
| |
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|||||||| || | |||||| | ||||||||||||||||||||| | || ||||||||||| |
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| T |
1012931 |
ttcccaatgtcactaaatggatcaaccttgttgttcaacgcaaactcaaccatcttcatct |
1012871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 48676447 - 48676297
Alignment:
| Q |
8 |
gccacattctatctttcaaccctaccaaaaacgctgttaccacttccattctttccaagaggtggactcatctatggcgctgtgttcctatcctcgattt |
107 |
Q |
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|
|||||||||| |||||||| ||||||||| |||| |||| |||| ||||||| |||||||||| |||||||||| ||| | ||||| | || || || |
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| T |
48676447 |
gccacattctctctttcaatcctaccaaagacgccgttatcactggagttctttcaaagaggtggattcatctatggtgctctattccttttcttgactt |
48676348 |
T |
|
| Q |
108 |
cacggatatcaaattgagagactgtgaatccattctcctattcaatcagtt |
158 |
Q |
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||| | ||||||||| || || ||||||||||||| ||||||||||| |
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| T |
48676347 |
caccaacatcaaattgggaaacatagaatccattctccacttcaatcagtt |
48676297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 28450736 - 28450644
Alignment:
| Q |
31 |
accaaaaacgctgttaccacttccattctttccaagaggtggactcatctatggcgctgtgttcctatcctcgatttcacggatatcaaattg |
123 |
Q |
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|||||| |||| ||||| || ||| |||| || |||||||||||| | |||||| ||| ||||||| | ||||| ||| | |||||||||||| |
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| T |
28450736 |
accaaagacgccgttacaacctccgttctctcaaagaggtggactaacctatggtgctttgttccttttctcgacttctccgatatcaaattg |
28450644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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