View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_high_9 (Length: 730)

Name: NF0583_high_9
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_high_9
NF0583_high_9
[»] chr2 (21 HSPs)
chr2 (30-196)||(1590521-1590687)
chr2 (266-515)||(1590757-1591007)
chr2 (574-719)||(1591064-1591205)
chr2 (407-475)||(25979251-25979319)
chr2 (407-468)||(1777467-1777528)
chr2 (407-467)||(2412428-2412488)
chr2 (407-467)||(25977869-25977929)
chr2 (407-474)||(8809588-8809656)
chr2 (407-467)||(23861751-23861811)
chr2 (407-463)||(36837778-36837834)
chr2 (407-466)||(30844548-30844607)
chr2 (310-364)||(25977973-25978027)
chr2 (407-472)||(19604919-19604984)
chr2 (407-472)||(30843638-30843703)
chr2 (407-463)||(4040216-4040272)
chr2 (407-466)||(1778790-1778849)
chr2 (407-466)||(2411262-2411321)
chr2 (407-466)||(11088680-11088739)
chr2 (407-466)||(25283272-25283331)
chr2 (298-348)||(11087170-11087220)
chr2 (407-464)||(23863050-23863107)
[»] chr8 (29 HSPs)
chr8 (266-468)||(22534580-22534783)
chr8 (300-468)||(22533315-22533483)
chr8 (407-467)||(10717120-10717180)
chr8 (407-467)||(10718448-10718508)
chr8 (407-466)||(28997993-28998052)
chr8 (407-468)||(36588220-36588281)
chr8 (407-467)||(38456730-38456790)
chr8 (407-474)||(28996826-28996893)
chr8 (407-465)||(4182623-4182681)
chr8 (407-469)||(22272270-22272332)
chr8 (409-467)||(45517962-45518020)
chr8 (411-464)||(3483635-3483688)
chr8 (407-468)||(14197823-14197884)
chr8 (407-468)||(36589387-36589448)
chr8 (407-467)||(38658480-38658540)
chr8 (411-466)||(1420446-1420501)
chr8 (407-466)||(3031543-3031602)
chr8 (149-196)||(22534435-22534482)
chr8 (407-470)||(41354467-41354530)
chr8 (407-482)||(45516382-45516456)
chr8 (411-465)||(39440426-39440480)
chr8 (407-464)||(38455449-38455506)
chr8 (407-467)||(30124223-30124283)
chr8 (407-466)||(4183979-4184038)
chr8 (310-364)||(4183881-4183935)
chr8 (419-468)||(30123150-30123199)
chr8 (442-475)||(34213520-34213553)
chr8 (407-468)||(39439922-39439983)
chr8 (407-468)||(41357366-41357427)
[»] chr3 (38 HSPs)
chr3 (271-364)||(20585387-20585480)
chr3 (407-475)||(52401008-52401076)
chr3 (407-469)||(32635591-32635653)
chr3 (407-469)||(53121299-53121361)
chr3 (407-467)||(39820604-39820664)
chr3 (122-193)||(20585206-20585279)
chr3 (407-475)||(45267296-45267364)
chr3 (407-467)||(46026075-46026135)
chr3 (407-467)||(52403124-52403184)
chr3 (407-466)||(4705681-4705740)
chr3 (414-469)||(35639504-35639559)
chr3 (407-466)||(48033058-48033117)
chr3 (407-466)||(52708617-52708676)
chr3 (407-465)||(20489358-20489416)
chr3 (407-468)||(40477374-40477435)
chr3 (407-476)||(46027417-46027486)
chr3 (411-467)||(20585648-20585704)
chr3 (407-467)||(45268570-45268630)
chr3 (407-467)||(47433809-47433869)
chr3 (411-463)||(52707539-52707591)
chr3 (407-467)||(54437467-54437527)
chr3 (407-474)||(32637188-32637255)
chr3 (407-474)||(41780808-41780875)
chr3 (407-466)||(46104343-46104402)
chr3 (407-469)||(3416492-3416554)
chr3 (415-465)||(40476222-40476272)
chr3 (407-469)||(53122471-53122533)
chr3 (407-464)||(20488368-20488425)
chr3 (407-468)||(43734041-43734102)
chr3 (407-467)||(976779-976839)
chr3 (407-474)||(9855169-9855237)
chr3 (407-463)||(22508738-22508794)
chr3 (415-467)||(42446525-42446577)
chr3 (407-466)||(43641143-43641202)
chr3 (426-468)||(44507818-44507860)
chr3 (407-441)||(46106764-46106798)
chr3 (407-465)||(48035732-48035790)
chr3 (407-464)||(39819314-39819371)
[»] chr4 (31 HSPs)
chr4 (266-348)||(55542438-55542520)
chr4 (266-347)||(3879210-3879291)
chr4 (300-468)||(3880389-3880557)
chr4 (407-472)||(33137228-33137293)
chr4 (407-467)||(19674413-19674473)
chr4 (407-467)||(45619731-45619791)
chr4 (407-466)||(22204055-22204114)
chr4 (412-471)||(32699319-32699378)
chr4 (272-347)||(41933938-41934013)
chr4 (407-466)||(42359346-42359405)
chr4 (99-196)||(3879389-3879483)
chr4 (407-467)||(45618284-45618344)
chr4 (411-468)||(34659704-34659761)
chr4 (407-467)||(3879085-3879145)
chr4 (407-475)||(42358023-42358091)
chr4 (99-190)||(55541710-55541802)
chr4 (414-467)||(41933817-41933870)
chr4 (407-463)||(16574368-16574424)
chr4 (292-364)||(17371728-17371800)
chr4 (407-473)||(40198570-40198633)
chr4 (415-463)||(41935078-41935126)
chr4 (407-467)||(54121700-54121760)
chr4 (411-466)||(19675624-19675679)
chr4 (407-466)||(22205222-22205281)
chr4 (407-470)||(47359510-47359573)
chr4 (298-348)||(29060771-29060821)
chr4 (427-468)||(5259171-5259212)
chr4 (407-468)||(17281569-17281630)
chr4 (407-468)||(17370071-17370132)
chr4 (407-468)||(29060882-29060943)
chr4 (407-468)||(55542579-55542640)
[»] scaffold0562 (3 HSPs)
scaffold0562 (266-347)||(10046-10127)
scaffold0562 (99-196)||(10225-10319)
scaffold0562 (407-467)||(9921-9981)
[»] chr1 (36 HSPs)
chr1 (407-477)||(27262897-27262967)
chr1 (407-468)||(9774888-9774949)
chr1 (407-476)||(23469969-23470038)
chr1 (407-467)||(27264216-27264276)
chr1 (407-471)||(37395628-37395692)
chr1 (407-466)||(46075050-46075109)
chr1 (407-468)||(47038864-47038925)
chr1 (407-467)||(35721100-35721160)
chr1 (407-466)||(24609919-24609978)
chr1 (407-469)||(24611117-24611179)
chr1 (407-469)||(26863857-26863919)
chr1 (407-468)||(11710551-11710612)
chr1 (407-468)||(20723688-20723749)
chr1 (411-468)||(48588965-48589022)
chr1 (411-468)||(48594052-48594109)
chr1 (411-468)||(48598663-48598720)
chr1 (407-463)||(9774040-9774096)
chr1 (407-471)||(17977559-17977623)
chr1 (407-467)||(35722285-35722345)
chr1 (407-467)||(39163024-39163084)
chr1 (407-466)||(11711254-11711312)
chr1 (407-466)||(20722472-20722531)
chr1 (407-466)||(24427369-24427428)
chr1 (407-470)||(35911888-35911951)
chr1 (298-348)||(30722235-30722285)
chr1 (407-467)||(34934747-34934807)
chr1 (408-468)||(50164401-50164461)
chr1 (407-466)||(17976761-17976820)
chr1 (407-466)||(37396840-37396899)
chr1 (407-469)||(13074574-13074636)
chr1 (266-348)||(24422634-24422716)
chr1 (407-469)||(27815438-27815500)
chr1 (407-461)||(27816720-27816774)
chr1 (417-467)||(45979506-45979556)
chr1 (419-469)||(48857197-48857247)
chr1 (315-364)||(39162928-39162977)
[»] chr5 (14 HSPs)
chr5 (407-468)||(3936576-3936637)
chr5 (407-466)||(6894010-6894069)
chr5 (407-467)||(3954051-3954111)
chr5 (407-468)||(27571129-27571190)
chr5 (407-467)||(3938060-3938120)
chr5 (407-467)||(4565392-4565452)
chr5 (407-467)||(31540495-31540555)
chr5 (413-464)||(27570058-27570109)
chr5 (407-468)||(34911828-34911889)
chr5 (412-476)||(14809153-14809217)
chr5 (413-476)||(15599755-15599818)
chr5 (407-466)||(31541622-31541681)
chr5 (300-354)||(35605463-35605517)
chr5 (407-464)||(15604058-15604114)
[»] chr7 (34 HSPs)
chr7 (407-468)||(24195605-24195666)
chr7 (407-476)||(31848144-31848213)
chr7 (407-468)||(35212066-35212127)
chr7 (407-479)||(13418937-13419009)
chr7 (407-467)||(25046240-25046300)
chr7 (407-474)||(12385707-12385774)
chr7 (407-474)||(38742173-38742240)
chr7 (407-468)||(41693643-41693704)
chr7 (407-468)||(42254956-42255017)
chr7 (407-467)||(5611507-5611567)
chr7 (407-467)||(17066424-17066484)
chr7 (407-467)||(32197909-32197969)
chr7 (407-467)||(41694955-41695015)
chr7 (414-465)||(31489942-31489993)
chr7 (407-474)||(36749247-36749314)
chr7 (407-468)||(11217071-11217132)
chr7 (287-364)||(32543581-32543658)
chr7 (308-348)||(554362-554402)
chr7 (407-467)||(12933418-12933478)
chr7 (407-467)||(24197103-24197163)
chr7 (308-348)||(31489836-31489876)
chr7 (407-463)||(32544774-32544830)
chr7 (413-468)||(554243-554298)
chr7 (416-467)||(39619800-39619851)
chr7 (273-347)||(9454236-9454310)
chr7 (298-364)||(9454860-9454926)
chr7 (407-465)||(31853549-31853607)
chr7 (411-465)||(32196685-32196739)
chr7 (435-476)||(35837914-35837955)
chr7 (413-466)||(36748198-36748250)
chr7 (299-348)||(36748316-36748365)
chr7 (435-476)||(41053832-41053873)
chr7 (407-460)||(43869912-43869965)
chr7 (411-472)||(44568320-44568381)
[»] scaffold0517 (2 HSPs)
scaffold0517 (407-471)||(11522-11586)
scaffold0517 (407-466)||(10315-10374)
[»] chr6 (22 HSPs)
chr6 (411-475)||(29291350-29291414)
chr6 (407-467)||(17517309-17517369)
chr6 (407-467)||(34998141-34998201)
chr6 (411-474)||(1974156-1974219)
chr6 (407-466)||(18810532-18810591)
chr6 (407-466)||(21165246-21165305)
chr6 (407-468)||(16995449-16995510)
chr6 (407-467)||(21953205-21953265)
chr6 (411-482)||(17516147-17516217)
chr6 (407-466)||(20897497-20897556)
chr6 (310-364)||(17000179-17000233)
chr6 (289-350)||(26421724-26421785)
chr6 (407-467)||(3276366-3276426)
chr6 (435-475)||(14656229-14656269)
chr6 (407-466)||(1972400-1972459)
chr6 (415-477)||(30253547-30253609)
chr6 (411-468)||(1171655-1171712)
chr6 (311-348)||(3279403-3279440)
chr6 (407-468)||(3279499-3279560)
chr6 (407-468)||(20391212-20391273)
chr6 (407-464)||(25440673-25440730)
chr6 (407-468)||(26421843-26421904)
[»] scaffold0001 (2 HSPs)
scaffold0001 (407-472)||(120985-121050)
scaffold0001 (407-466)||(119593-119652)
[»] scaffold0106 (2 HSPs)
scaffold0106 (407-467)||(30907-30967)
scaffold0106 (407-467)||(29728-29788)
[»] scaffold0002 (5 HSPs)
scaffold0002 (407-467)||(345897-345957)
scaffold0002 (300-364)||(376261-376325)
scaffold0002 (407-467)||(344936-344996)
scaffold0002 (407-466)||(374335-374394)
scaffold0002 (419-467)||(376381-376429)
[»] scaffold0230 (1 HSPs)
scaffold0230 (407-466)||(431-490)
[»] scaffold0009 (2 HSPs)
scaffold0009 (285-347)||(202699-202762)
scaffold0009 (407-467)||(202578-202638)
[»] scaffold0095 (1 HSPs)
scaffold0095 (411-465)||(42759-42813)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 1e-86; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 1590521 - 1590687
Alignment:
Q  30 gttataaagcaaggcagcgctggtgaaaagattccatcgtcatataataagtatacttgctaaaatatgcatagaacttcatcatcaaagggtggaagtt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1590521 gttataaagcaaggcagcgctggtgaaaagattccatcgtcatataataagtatacttgctaaaatatgcatagaatttcatcatcaaagggtggaagtt 1590620  T
Q  130 taggatgcttgttctctcatgaacaaacatgttgctaaagaagacatgattaattgatttcacatag 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1590621 taggatgcttgttctctcatgaacaaacatgttgctaaagaagacatgattaattgatttcacatag 1590687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 266 - 515
Target Start/End: Original strand, 1590757 - 1591007
Alignment:
Q  266 gccacctagatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaacttttttn 365  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||     
T  1590757 gccatctagataccatgtatacaaatttgtatagtcagcacttgccacataaacaaaaatgagccaaatcaacaagaaagtggattcagggactttttta 1590856  T
Q  366 nnnnnnnnnnnnttttgcagggatgaaattcnnnnnnnnnn-ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
                ||||||||||||||||||            ||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  1590857 aaaaacaaaaaattttgcagggatgaaattaaaaaaaaaaaattatcagagaccaaaatctaaactcgttatattttcaaggaccaaaaacatattttag 1590956  T
Q  465 ccttatttttatattaaacacattcaaaacaaataagataaagtaatacac 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1590957 ccttatttttatattaaacacattcaaaacaaataagataaagtaatacac 1591007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 574 - 719
Target Start/End: Original strand, 1591064 - 1591205
Alignment:
Q  574 gcatccacctattactcaatctcattcccacacccacccacccaccatatacgtacatatattatatccaattatcgatatatagatcatttcaattatt 673  Q
    |||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1591064 gcatccacctattactcagtctcattcccacacc----cacccaccatatacgtacatatattatatccaattatcgatatatagatcatttcaattatt 1591159  T
Q  674 tttagctgcctcgattattattcctttgcttactcattctcttcat 719  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  1591160 tttagctgcctcaattattattcctttgcttactcattctcttcat 1591205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 475
Target Start/End: Original strand, 25979251 - 25979319
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 475  Q
    |||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||| |||||    
T  25979251 ttaccagggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagccttaatttta 25979319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 1777528 - 1777467
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||  ||||||||||||||| || ||||||||||||||||||||||||    
T  1777528 ttaccagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagcctt 1777467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 2412428 - 2412488
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    ||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||    
T  2412428 ttaccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcct 2412488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 25977929 - 25977869
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||    
T  25977929 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaaacatattttagcct 25977869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 474
Target Start/End: Complemental strand, 8809656 - 8809588
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaagg-accaaaaacatattttagccttattttt 474  Q
    |||||||||||||||||| ||| ||| ||||||| ||||| |||||||||||||||||||||| |||||    
T  8809656 ttaccagggaccaaaacccaaattcgttatatttgcaagggaccaaaaacatattttagcctttttttt 8809588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 23861811 - 23861751
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||| | |||||| | |||||| || |||||||||||||||||||||||    
T  23861811 ttaccagggaccaaaatccaaactctccatatttgcagggaccaaaaacatattttagcct 23861751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 463
Target Start/End: Original strand, 36837778 - 36837834
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 463  Q
    |||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||    
T  36837778 ttaccagggaccaaaacccaaactcgctatatttgcagagaccaaaaatatatttta 36837834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 30844548 - 30844607
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||| |||| |||||  |||||| ||||||| |||||||||||||||||||||||||    
T  30844548 ttaccagagaccgaaacccgaactcgttatatttgcaaggaccaaaaacatattttagcc 30844607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 25978027 - 25977973
Alignment:
Q  310 ccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    |||| |||||||||||| ||||||||||||||||||||| | |||| ||||||||    
T  25978027 ccacctaagcaaaaatgtgccaaatcagcaagaaagtgggtccagggactttttt 25977973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 19604919 - 19604984
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 472  Q
    |||||||||||||||||| |||   || |||||| || |||||||||||||||||||||| |||||    
T  19604919 ttaccagggaccaaaacccaaatgagccatatttacagggaccaaaaacatattttagccatattt 19604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 472
Target Start/End: Complemental strand, 30843703 - 30843638
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 472  Q
    |||||||||||||||||| ||||||| ||||||| ||  ||  |||| ||||||||||||||||||    
T  30843703 ttaccagggaccaaaacccaaactcgttatatttgcagtgattaaaagcatattttagccttattt 30843638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 463
Target Start/End: Original strand, 4040216 - 4040272
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 463  Q
    |||||||||| ||||||||||| || |||||||| || ||||||||| |||||||||    
T  4040216 ttaccagggagcaaaacctaaattctctatatttgcagggaccaaaatcatatttta 4040272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 1778790 - 1778849
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||| ||||||||||| ||| ||||||||||| || | ||||||| ||||||||||||    
T  1778790 ttaccaaggaccaaaacccaaagtcgctatatttgcaggaaccaaaagcatattttagcc 1778849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 2411321 - 2411262
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||||||||| || |||| |||||||| || |||| |||| ||||||||||||    
T  2411321 ttaccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcc 2411262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 11088680 - 11088739
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||| ||||||||  ||| ||||||||||| || |||| |||||||||||||||||    
T  11088680 ttaccaggaaccaaaactcaaattcgctatatttgcatggacgaaaaacatattttagcc 11088739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 25283272 - 25283331
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||| ||||||  ||| ||||||||||| ||  |||||||||||||||||||||    
T  25283272 ttaccagggatcaaaactcaaattcgctatatttgcagtgaccaaaaacatattttagcc 25283331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 11087220 - 11087170
Alignment:
Q  298 agtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    |||||||| |||||||  | ||||||||||| |||||||||||||||||||    
T  11087220 agtcagcatttgccacgcaggcaaaaatgagacaaatcagcaagaaagtgg 11087170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 23863050 - 23863107
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
    |||| ||||| ||||||| |||||||| |||||| ||  |||||||||||||||||||    
T  23863050 ttactagggatcaaaacccaaactcgccatatttgcagagaccaaaaacatattttag 23863107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 9e-32; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 266 - 468
Target Start/End: Original strand, 22534580 - 22534783
Alignment:
Q  266 gccacctagatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaacttttttn 365  Q
    |||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||     
T  22534580 gccacctaaatgcaatgtatacaagtttgtacagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgggtccaaggactttttta 22534679  T
Q  366 nnnnnnnnnnnnttttgcagggatgaaattc-nnnnnnnnnnttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
                |||||||||| ||||||||           |||||||||||||||||| ||||||||||||||| || ||| ||||| ||||||||||    
T  22534680 aaaaacaaaaaattttgcagggttgaaattcaaaaaaaaattttaccagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttag 22534779  T
Q  465 cctt 468  Q
    ||||    
T  22534780 cctt 22534783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 300 - 468
Target Start/End: Complemental strand, 22533483 - 22533315
Alignment:
Q  300 tcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaacttttttnnnnnnnnnnnnnttttgcagggatgaaattc-nn 398  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||             |||||||||||||||||||       
T  22533483 tcagcacctgccacataagcaacaatgagtcaaatcagcaagaaagtggatccagggactttttt-aaaaaacaaaaattttgcagggatgaaattcaaa 22533385  T
Q  399 nnnnnnnnttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
            |||||||||||||||||| ||||||||||||| | || ||||||||| ||||||||||||||    
T  22533384 aattttttttaccagggaccaaaacccaaactcgctatatatacagggaccaaaagcatattttagcctt 22533315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 10717180 - 10717120
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  10717180 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcct 10717120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 10718448 - 10718508
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  10718448 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcct 10718508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 28997993 - 28998052
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  28997993 ttactagggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 28998052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 36588281 - 36588220
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||  ||||||||||||||| || ||||||||| ||||||||||||||    
T  36588281 ttaccagggaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagcctt 36588220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 38456730 - 38456790
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||||||| | ||||||||| || ||||||||| |||||||||||||    
T  38456730 ttaccagggaccaaaacctaaatttgctatatttgcagggaccaaaagcatattttagcct 38456790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 474
Target Start/End: Complemental strand, 28996893 - 28996826
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 474  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||||| || |||||    
T  28996893 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcatttttttt 28996826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 4182681 - 4182623
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    |||||||||||||||||| ||| ||||||||||| || ||||||||| |||||||||||    
T  4182681 ttaccagggaccaaaacccaaattcgctatatttacagggaccaaaagcatattttagc 4182623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 469
Target Start/End: Original strand, 22272270 - 22272332
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    |||||||||||||||||| ||| ||||||||||| |  ||||||||| |||||||||||||||    
T  22272270 ttaccagggaccaaaacccaaattcgctatatttgcggggaccaaaagcatattttagcctta 22272332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 467
Target Start/End: Original strand, 45517962 - 45518020
Alignment:
Q  409 accagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||| |||||||||||| || || ||||||||| |||||||||||||    
T  45517962 accagggaccaaaacccaaactcgctatacttgcagggaccaaaagcatattttagcct 45518020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 3483688 - 3483635
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
    |||||||||||||  ||||||||||||||| || ||||||||||||||||||||    
T  3483688 cagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 14197884 - 14197823
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||| ||||||||||| | |||||||| |||||| || ||||||||||||||||||||||||    
T  14197884 ttactagggaccaaaatccaaactcgccatatttgcagggaccaaaaacatattttagcctt 14197823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 36589387 - 36589448
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||| ||||||||||||||||||||||||||| || | || |||| ||||||||||||||    
T  36589387 ttaccaaggaccaaaacctaaactcgctatatttgcaggaactaaaatcatattttagcctt 36589448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 38658540 - 38658480
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||| ||||||||||| || |||||| || |||||||||||||    
T  38658540 ttaccagggaccaaaacccaaattcgctatatttgcatggaccagaagcatattttagcct 38658480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 1420446 - 1420501
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||| | | ||||||||||||||| || ||||||||||||||||||||||    
T  1420446 cagggaccaatatccaaactcgctatatttgcagggaccaaaaacatattttagcc 1420501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 3031543 - 3031602
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||||||||||||||   || |||||| || ||||||||||||||||||||||    
T  3031543 ttaccagggaccaaaacctaaatgagccatatttacagggaccaaaaacatattttagcc 3031602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 22534435 - 22534482
Alignment:
Q  149 tgaacaaacatgttgctaaagaagacatgattaattgatttcacatag 196  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  22534435 tgaacaaacatattggtaaagaagagatgattaattgatttcacatag 22534482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 41354530 - 41354467
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttat 470  Q
    |||||||| |||||||   |||||||||||||||  ||||||||||||||||||||||| ||||    
T  41354530 ttaccaggaaccaaaattcaaactcgctatatttataaggaccaaaaacatattttagctttat 41354467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 482
Target Start/End: Complemental strand, 45516456 - 45516382
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttatattaaa 482  Q
    ||||||| |||||||||| ||| ||||||||||| || |||| ||||||||||||||| ||| ||| |||||||||    
T  45516456 ttaccagagaccaaaacccaaattcgctatatttacatggactaaaaacatattttagtctt-tttatatattaaa 45516382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 465
Target Start/End: Original strand, 39440426 - 39440480
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    |||||||||||||  |||||||| |||||| |||||||||||| |||||||||||    
T  39440426 cagggaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 39440480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 38455506 - 38455449
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
    |||| ||||||||||||  ||| || |||||||| |||||||||||||||||||||||    
T  38455506 ttactagggaccaaaactcaaattcactatatttgcaaggaccaaaaacatattttag 38455449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 30124223 - 30124283
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||  ||||| ||| ||||| || ||||||||| |||||||||||||    
T  30124223 ttaccagggaccaaaactcaaacttgctttatttgcagggaccaaaagcatattttagcct 30124283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 4183979 - 4184038
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||| |||| | |||||||| || |||| |||| ||||||||||||    
T  4183979 ttaccagggaccaaaacccaaacgcactatatttgcagggactaaaagcatattttagcc 4184038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 4183881 - 4183935
Alignment:
Q  310 ccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    |||| |||||||||||| ||||||| ||||||||||||| | |||| ||||||||    
T  4183881 ccacctaagcaaaaatgtgccaaattagcaagaaagtgggtccagggactttttt 4183935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 468
Target Start/End: Complemental strand, 30123199 - 30123150
Alignment:
Q  419 aaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||| ||| |||||||||||  | ||||||||||||||||||||||||    
T  30123199 aaaacccaaattcgctatatttgtatggaccaaaaacatattttagcctt 30123150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 475
Target Start/End: Original strand, 34213520 - 34213553
Alignment:
Q  442 caaggaccaaaaacatattttagccttattttta 475  Q
    |||||||||||| |||||||||||||||||||||    
T  34213520 caaggaccaaaaccatattttagccttattttta 34213553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 39439983 - 39439922
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||||| |||||||  ||||| || |||||| || ||||||||| ||||||||||||||    
T  39439983 ttaccagggtccaaaactcaaactagccatatttgcagggaccaaaatcatattttagcctt 39439922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 41357366 - 41357427
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||  ||||||||| |||||| | |||||| | |||||||||||||||||||| ||||    
T  41357366 ttaccagaaaccaaaacccaaactcaccatatttgcgaggaccaaaaacatattttaacctt 41357427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 9e-29; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 20585387 - 20585480
Alignment:
Q  271 ctagatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||    
T  20585387 ctagatgccatgtatacaagtttgtacagtcagcacatgccacataagcaaaaatgagtcaaatcagcaagaaagtgggttcagggaccttttt 20585480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 475
Target Start/End: Complemental strand, 52401076 - 52401008
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 475  Q
    |||||||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||| |||||    
T  52401076 ttaccagggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagccttaatttta 52401008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 407 - 469
Target Start/End: Complemental strand, 32635653 - 32635591
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  32635653 ttaccagggaccaaaacccaaactcgctatatttacaaggacaaaaaatatattttagcctta 32635591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 407 - 469
Target Start/End: Complemental strand, 53121361 - 53121299
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    ||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||    
T  53121361 ttaccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctta 53121299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 39820604 - 39820664
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  39820604 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaaccatattttagcct 39820664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 20585206 - 20585279
Alignment:
Q  122 tggaagtttaggatgcttgttct--ctcatgaacaaacatgttgctaaagaagacatgattaattgatttcaca 193  Q
    |||||| ||||||||||||||||  || |||||||||||||||  |||||| ||||||||||||||||||||||    
T  20585206 tggaagattaggatgcttgttcttgctgatgaacaaacatgttcgtaaagatgacatgattaattgatttcaca 20585279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 475
Target Start/End: Complemental strand, 45267364 - 45267296
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 475  Q
    |||||||||||||||||  ||||||||||||||| || ||| ||||||||||||||||| || ||||||    
T  45267364 ttaccagggaccaaaactcaaactcgctatatttgcagggatcaaaaacatattttagcttttttttta 45267296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 46026135 - 46026075
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||| ||||||||||| | ||||||||||||||| || |||||||||||||||||||||||    
T  46026135 ttactagggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagcct 46026075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 52403124 - 52403184
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| |||||||| |||||| || ||||||||| |||||||||||||    
T  52403124 ttaccagggaccaaaacccaaactcgccatatttgcagggaccaaaagcatattttagcct 52403184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 4705740 - 4705681
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||||||||||||||||||| |||||| || ||| ||||| ||||||||||||    
T  4705740 ttaccagggaccaaaacctaaactcgccatatttgcagggatcaaaagcatattttagcc 4705681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 35639559 - 35639504
Alignment:
Q  414 ggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    ||||||||||  ||||| |||||||||||||||||||||| |||||||||||||||    
T  35639559 ggaccaaaactcaaacttgctatattttcaaggaccaaaagcatattttagcctta 35639504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 48033117 - 48033058
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||| | |||||| | |||||| |||||||||||||||||||||||||    
T  48033117 ttaccagggaccaaaatccaaactcaccatatttgcaaggaccaaaaacatattttagcc 48033058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 52708617 - 52708676
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||| |||||||||| ||||||||||||||| || ||||||||| ||||||||||||    
T  52708617 ttaccagagaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcc 52708676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 465
Target Start/End: Original strand, 20489358 - 20489416
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    |||||||||||||||||| |||||||  |||||| || |||||||||||||||||||||    
T  20489358 ttaccagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattttagc 20489416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 40477374 - 40477435
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||| ||||||||||||| ||||||| ||||||| || ||||||||| ||||||||||||||    
T  40477374 ttactagggaccaaaacccaaactcgttatatttgcagggaccaaaatcatattttagcctt 40477435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 476
Target Start/End: Original strand, 46027417 - 46027486
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 476  Q
    ||||||||||||||||   ||||||||||||||| || |||||||||  ||||||||||||| |||||||    
T  46027417 ttaccagggaccaaaattcaaactcgctatatttgcagggaccaaaagtatattttagccttctttttat 46027486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 20585648 - 20585704
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||| | ||||||||||||||| || ||| |||||||||||||||||||    
T  20585648 cagggaccaaaatccaaactcgctatatttgcagggatcaaaaacatattttagcct 20585704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 45268570 - 45268630
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||| ||||||||| || |||  ||||||||||||||||||    
T  45268570 ttaccagggaccaaaacccaaacttgctatatttgcagggattaaaaacatattttagcct 45268630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 47433809 - 47433869
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||  ||| ||||||||||| || ||||||||| |||||||||||||    
T  47433809 ttaccagggaccaaaactcaaattcgctatatttgcagggaccaaaaccatattttagcct 47433869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 52707591 - 52707539
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 463  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||||||||||    
T  52707591 cagggaccaaaactcaaattcgctatatttgcaaggaccaaaaacatatttta 52707539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 54437467 - 54437527
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||| ||||||||||||  ||| ||||||||||| || |||||||||||||||||||||||    
T  54437467 ttactagggaccaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcct 54437527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 474
Target Start/End: Original strand, 32637188 - 32637255
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 474  Q
    |||||||| ||||||||| |||||||||| |||| || ||||||||| ||||||||||| || |||||    
T  32637188 ttaccaggaaccaaaacccaaactcgctacatttacagggaccaaaagcatattttagcatttttttt 32637255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 474
Target Start/End: Original strand, 41780808 - 41780875
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 474  Q
    |||| ||||||| ||||| ||||| |||||||||| | ||| |||||||||||||||||||| |||||    
T  41780808 ttactagggaccgaaacccaaacttgctatatttttagggatcaaaaacatattttagcctttttttt 41780875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 46104402 - 46104343
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||| |||||  ||||||||||||||| || ||||||||| ||||||||||||    
T  46104402 ttaccagggacaaaaactcaaactcgctatatttgcagggaccaaaatcatattttagcc 46104343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 469
Target Start/End: Complemental strand, 3416554 - 3416492
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    |||||||||||||||| | ||||| ||||||||| || ||| ||||| |||||||||||||||    
T  3416554 ttaccagggaccaaaaaccaaacttgctatatttacagggatcaaaatcatattttagcctta 3416492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 40476272 - 40476222
Alignment:
Q  415 gaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    |||||||| | ||||||||||||||| || |||||||||||||||||||||    
T  40476272 gaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagc 40476222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 407 - 469
Target Start/End: Original strand, 53122471 - 53122533
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    ||||||||||||||||| || |||| |||||||| || |||| |||| |||||||||||||||    
T  53122471 ttaccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcctta 53122533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 20488425 - 20488368
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
    |||||||||||||||||| ||| || | |||||| || ||||||||||||||||||||    
T  20488425 ttaccagggaccaaaacccaaattcaccatatttgcagggaccaaaaacatattttag 20488368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 43734041 - 43734102
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||| |||||||||| ||||| ||||||||| |||| ||||||  ||||||||||||||    
T  43734041 ttaccagagaccaaaacccaaacttgctatatttgcaagaaccaaacgcatattttagcctt 43734102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 976839 - 976779
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    ||||||||||| ||||| |||| ||||||||||| || ||| ||||| |||||||||||||    
T  976839 ttaccagggactaaaacttaaattcgctatatttgcagggatcaaaagcatattttagcct 976779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 474
Target Start/End: Complemental strand, 9855237 - 9855169
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc-ttattttt 474  Q
    |||| ||||||||||| | ||||||||||||||| || ||| ||||| |||||||||||| ||||||||    
T  9855237 ttactagggaccaaaatccaaactcgctatatttacagggatcaaaatcatattttagccattattttt 9855169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 22508794 - 22508738
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 463  Q
    |||||| ||||||||||  ||||||||||||||| || ||||||||| |||||||||    
T  22508794 ttaccaaggaccaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 42446577 - 42446525
Alignment:
Q  415 gaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||| |||||||| |||||| || ||||||||| |||||||||||||    
T  42446577 gaccaaaacccaaactcgccatatttgcagggaccaaaagcatattttagcct 42446525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 43641202 - 43641143
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||||| || | ||||||||||||||| || |||| |||| ||||||||||||    
T  43641202 ttaccagggaccataatccaaactcgctatatttgcagggactaaaagcatattttagcc 43641143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 44507818 - 44507860
Alignment:
Q  426 aaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||||||||||| || ||||||||| ||||||||||||||    
T  44507818 aaactcgctatatttgcagggaccaaaatcatattttagcctt 44507860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 441
Target Start/End: Original strand, 46106764 - 46106798
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatatttt 441  Q
    |||||||||||||||||| ||||||||||||||||    
T  46106764 ttaccagggaccaaaacccaaactcgctatatttt 46106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 465
Target Start/End: Original strand, 48035732 - 48035790
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    |||||||||||||||| | |||||||  |||||| || ||| |||||||||||||||||    
T  48035732 ttaccagggaccaaaatccaaactcgtcatatttgcagggatcaaaaacatattttagc 48035790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 39819371 - 39819314
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
    ||||||||||||||||   ||||||||||||||| || |||| |||| ||||||||||    
T  39819371 ttaccagggaccaaaattcaaactcgctatatttgcagggactaaaaccatattttag 39819314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 55542438 - 55542520
Alignment:
Q  266 gccacctagatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||| ||||||||||||| ||||||| |||||||||||    
T  55542438 gccacctagatgccatgtatacaagtttgtacggtcagcacttgcaacaaaagcaaaaatgagtcaaatcaacaagaaagtgg 55542520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 3879291 - 3879210
Alignment:
Q  266 gccacctagatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 347  Q
    |||||||| |||| |||||||||| ||| || || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  3879291 gccacctaaatgcaatgtatacaattttatacagccagcacttggcacataagcaaaaatgagccaaatcagcaagaaagtg 3879210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 300 - 468
Target Start/End: Original strand, 3880389 - 3880557
Alignment:
Q  300 tcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaacttttttnnnnnnnnnnnnnttttgcagggatgaaattcnnn 399  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||| ||| | |||| ||||||||             |||||||||||| ||||||       
T  3880389 tcagcacctgccacataagcaacaatgagccaaatcagtaagaaaatgggtccagggacttttttaaaaaacaaaattttttgcagggataaaattcaat 3880488  T
Q  400 nnnnnnnttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
           |||| ||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  3880489 tttttttttactagggaccaaaacccaaactcgctatatttgcaggaaccaaaaacatattttagcctt 3880557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 33137228 - 33137293
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 472  Q
    ||||||||||| |||||| ||||||||||||||| || ||| ||||||||||||||||||||||||    
T  33137228 ttaccagggactaaaacccaaactcgctatatttgcagggatcaaaaacatattttagccttattt 33137293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 19674473 - 19674413
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||    
T  19674473 ttaccagggaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagcct 19674413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 45619731 - 45619791
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||    
T  45619731 ttaccagggaacaaaacctaaactcgctatatttgcagggactaaaaacatattttagcct 45619791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 22204114 - 22204055
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||    
T  22204114 ttaccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 22204055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 412 - 471
Target Start/End: Original strand, 32699319 - 32699378
Alignment:
Q  412 agggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatt 471  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||    
T  32699319 agggaccaaaacccaaactcgctatatttacagggaccaaaaacatattttagccatatt 32699378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 41934013 - 41933938
Alignment:
Q  272 tagatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 347  Q
    ||||||||| |||||||| |||| |  |||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  41934013 tagatgccacgtatacaagtttgaacggtcaacacctgccacataagcaaaaatgagccacatcagcaagaaagtg 41933938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 42359346 - 42359405
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||    
T  42359346 ttaccagggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagcc 42359405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 3879483 - 3879389
Alignment:
Q  99 catagaacttcatcatcaaagggtggaagtttaggatgcttgttct--ctcatgaacaaacatgttgctaaagaagacatgattaattgatttcacatag 196  Q
    |||||||||| |||||||||| ||||||| ||     |||||||||  || |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  3879483 catagaacttgatcatcaaagagtggaagatt-----gcttgttcttgctgatgaacaaacatattggtaaagaagagatgattaattgatttcacatag 3879389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 45618344 - 45618284
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| ||||| |||||||    
T  45618344 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatatattagcct 45618284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 34659761 - 34659704
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||||||||||| ||||||| |||||| || ||||||||| ||||||||||||||    
T  34659761 cagggaccaaaaccttaactcgccatatttgcagggaccaaaagcatattttagcctt 34659704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 3879145 - 3879085
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||| | ||||||||||||||| || ||| ||||| |||||||||||||    
T  3879145 ttaccagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatattttagcct 3879085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 475
Target Start/End: Complemental strand, 42358091 - 42358023
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 475  Q
    |||||||||| ||||||  |||||  |||||||| || |||||||||||||||||||||||| ||||||    
T  42358091 ttaccagggatcaaaactcaaacttcctatatttgcagggaccaaaaacatattttagcctttttttta 42358023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 55541710 - 55541802
Alignment:
Q  99 catagaacttcatcatcaaagggtggaagtttaggatgcttgttctc--tcatgaacaaacatgttgctaaagaagacatgattaattgatttc 190  Q
    |||||||||| |||| |||||| || ||| ||||||||||||||||   | || ||||||||||||| ||||||| |||||||| |||||||||    
T  55541710 catagaacttgatcaacaaagg-tgaaagattaggatgcttgttcttgttgatcaacaaacatgttggtaaagaaaacatgatttattgatttc 55541802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 41933870 - 41933817
Alignment:
Q  414 ggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    ||||||||||| ||||||||||||||| ||  |||||||| |||||||||||||    
T  41933870 ggaccaaaacccaaactcgctatatttgcagagaccaaaatcatattttagcct 41933817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 463
Target Start/End: Original strand, 16574368 - 16574424
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 463  Q
    |||| |||||||||||| |||| ||||||||||| || |||| ||||||||||||||    
T  16574368 ttacaagggaccaaaacttaaattcgctatatttgcagggactaaaaacatatttta 16574424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 17371728 - 17371800
Alignment:
Q  292 ttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    ||||| |||||||| ||||||| ||| | |||||| | ||||||||||||||||||||| || | ||||||||    
T  17371728 ttgtacagtcagcaattgccacgtaaactaaaatgtgtcaaatcagcaagaaagtggatccaaggactttttt 17371800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 40198633 - 40198570
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttt 473  Q
    |||||||||||||||||| ||||||||||||||| || ||   |||| |||||||||||||| ||||    
T  40198633 ttaccagggaccaaaacccaaactcgctatatttgcaggg---aaaagcatattttagccttttttt 40198570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 41935078 - 41935126
Alignment:
Q  415 gaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 463  Q
    |||||||||| ||||||| ||||||| || |||||||||||||||||||    
T  41935078 gaccaaaacccaaactcgttatatttgcagggaccaaaaacatatttta 41935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 54121700 - 54121760
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||||||  ||||| || ||| ||||| |||||||||||||    
T  54121700 ttaccagggaccaaaacccaaactcgccgtatttgcagggagcaaaatcatattttagcct 54121760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 19675624 - 19675679
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||| | ||||||| ||||||| || ||||||||| ||||||||||||    
T  19675624 cagggaccaaaatccaaactcgttatatttgcagggaccaaaagcatattttagcc 19675679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 22205222 - 22205281
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||||||||| || |||| |||||||| || |||| |||| ||||||||||||    
T  22205222 ttaccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcc 22205281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 47359573 - 47359510
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttat 470  Q
    ||||||||||| |||||  ||| ||||||||||| |||| || ||||||||||||||| |||||    
T  47359573 ttaccagggactaaaactcaaattcgctatatttgcaagaacgaaaaacatattttagtcttat 47359510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 29060771 - 29060821
Alignment:
Q  298 agtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    |||||||| ||||||| || |||||||||||  ||||||||||||||||||    
T  29060771 agtcagcatttgccacgtaggcaaaaatgagataaatcagcaagaaagtgg 29060821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 5259171 - 5259212
Alignment:
Q  427 aactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||| |||||| || ||||||||||||||||||||||||    
T  5259171 aactcgccatatttgcagggaccaaaaacatattttagcctt 5259212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 17281630 - 17281569
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||| | ||| ||||||||||| || |||| |||| || |||||||||||    
T  17281630 ttaccagggaccaaaatccaaattcgctatatttgcagggactaaaagcacattttagcctt 17281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 17370132 - 17370071
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||| | ||| ||||||||||| || |||| |||| || |||||||||||    
T  17370132 ttaccagggaccaaaatccaaattcgctatatttgcagggactaaaagcacattttagcctt 17370071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 29060882 - 29060943
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||| |||||||||   ||||||||||||||| || |||  |||||||||||||||||||    
T  29060882 ttaccaaggaccaaaattcaaactcgctatatttgcagggattaaaaacatattttagcctt 29060943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 55542579 - 55542640
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||||||||||| || ||||  ||||||||| || ||| |||||||| |||||||||||    
T  55542579 ttaccagggaccaaatcccaaacatgctatatttgcagggatcaaaaacagattttagcctt 55542640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 10127 - 10046
Alignment:
Q  266 gccacctagatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 347  Q
    |||||||| |||| |||||||||| ||| || || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10127 gccacctaaatgcaatgtatacaattttatacagccagcacttggcacataagcaaaaatgagccaaatcagcaagaaagtg 10046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 10319 - 10225
Alignment:
Q  99 catagaacttcatcatcaaagggtggaagtttaggatgcttgttct--ctcatgaacaaacatgttgctaaagaagacatgattaattgatttcacatag 196  Q
    |||||||||| |||||||||| ||||||| ||     |||||||||  || |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  10319 catagaacttgatcatcaaagagtggaagatt-----gcttgttcttgctgatgaacaaacatattggtaaagaagagatgattaattgatttcacatag 10225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 9981 - 9921
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||| | ||||||||||||||| || ||| ||||| |||||||||||||    
T  9981 ttaccagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatattttagcct 9921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 407 - 477
Target Start/End: Complemental strand, 27262967 - 27262897
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttata 477  Q
    |||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  27262967 ttaccagggaccaaaacacaaactcgctatatttgcagggaccaaaaacatattttagccttatttatata 27262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 9774888 - 9774949
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||    
T  9774888 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctt 9774949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 407 - 476
Target Start/End: Original strand, 23469969 - 23470038
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 476  Q
    |||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||||| | |||||||    
T  23469969 ttaccagggatcaaaaccgaaactcgctatatttgcagggaccaaaaacatattttagccatttttttat 23470038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 27264216 - 27264276
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  27264216 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcct 27264276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 37395692 - 37395628
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatt 471  Q
    |||||||||||||||||| |||  |||||||||| || |||||||||||||||||||||||||||    
T  37395692 ttaccagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagccttatt 37395628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 46075050 - 46075109
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||| ||||||||||||||| || ||| ||||||||||||||||||    
T  46075050 ttaccagggaccaaaacccaaactcgctatatttgcagggatcaaaaacatattttagcc 46075109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 47038925 - 47038864
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||| ||||| ||||||||| || |||| |||||||||||||||||||    
T  47038925 ttaccagggaccaaaacccaaactagctatatttgcagggactaaaaacatattttagcctt 47038864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 35721160 - 35721100
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||| ||| ||||||| || |||||||||||||||||||||||    
T  35721160 ttaccagggaccaaaacccaaattcgttatatttgcagggaccaaaaacatattttagcct 35721100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 24609978 - 24609919
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||| ||||||||||||| |||||||| |||||| || ||||||||||||||||||||||    
T  24609978 ttactagggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagcc 24609919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 469
Target Start/End: Original strand, 24611117 - 24611179
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    |||||||||||||||||  |||||||  |||||| || |||||||||||||||||||||||||    
T  24611117 ttaccagggaccaaaactcaaactcgtcatatttacagggaccaaaaacatattttagcctta 24611179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 469
Target Start/End: Complemental strand, 26863919 - 26863857
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    |||||||||||||||||  ||| ||||||||||| || |||||||||||| ||||||||||||    
T  26863919 ttaccagggaccaaaactcaaattcgctatatttgcagggaccaaaaacacattttagcctta 26863857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 11710612 - 11710551
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||| || |||| ||||||| || ||| ||||||||||||||||||||    
T  11710612 ttaccagggaccaaaacccaacctcgttatatttacagggatcaaaaacatattttagcctt 11710551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 20723688 - 20723749
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||||||| |||||  ||| ||||||||||| || ||||||||||||||||||||||||    
T  20723688 ttaccagggactaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcctt 20723749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 48588965 - 48589022
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||| |||||| | |||||| || ||||||||||||||||||||||||    
T  48588965 cagggaccaaaacccaaactcaccatatttacagggaccaaaaacatattttagcctt 48589022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 48594052 - 48594109
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||| ||||||| |||||||| |||||| || ||||||||||||||||||||||||    
T  48594052 cagggatcaaaacccaaactcgccatatttacagggaccaaaaacatattttagcctt 48594109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 48598663 - 48598720
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||| ||||||| |||||||| |||||| || ||||||||||||||||||||||||    
T  48598663 cagggatcaaaacccaaactcgccatatttacagggaccaaaaacatattttagcctt 48598720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 9774096 - 9774040
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 463  Q
    |||||||||||||||||  ||||||| ||||||| || |||||||||||||||||||    
T  9774096 ttaccagggaccaaaactcaaactcgttatatttgcagggaccaaaaacatatttta 9774040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 17977559 - 17977623
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatt 471  Q
    |||||| ||||||||||| ||| ||||||||||| || ||||||||| ||||||| |||||||||    
T  17977559 ttaccaaggaccaaaacccaaattcgctatatttgcagggaccaaaaccatatttaagccttatt 17977623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 35722285 - 35722345
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    ||||||| |||||||| | ||| ||||||||||| || |||||||||||||||||||||||    
T  35722285 ttaccagagaccaaaatccaaattcgctatatttacagggaccaaaaacatattttagcct 35722345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 39163024 - 39163084
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| || ||||| |||||| || ||||||||| |||||||||||||    
T  39163024 ttaccagggaccaaaacccaacctcgccatatttgcagggaccaaaagcatattttagcct 39163084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 11711254 - 11711312
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||||||| || ||| ||||||||||| || ||||||||||||||||||||||    
T  11711254 ttaccagggaccaaaccc-aaattcgctatatttgcagggaccaaaaacatattttagcc 11711312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 20722531 - 20722472
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||| ||| ||||||||||| || ||||||||| || |||||||||    
T  20722531 ttaccagggaccaaaacccaaattcgctatatttgcagggaccaaaagcacattttagcc 20722472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 24427369 - 24427428
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||| |||||  |||||||||||||||  | ||||||||||||||||||||||    
T  24427369 ttaccagggactaaaactcaaactcgctatatttgtagggaccaaaaacatattttagcc 24427428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 470
Target Start/End: Original strand, 35911888 - 35911951
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttat 470  Q
    |||||| ||||||||| | ||| ||||||||||| || ||||||||| ||||||||||||||||    
T  35911888 ttaccaaggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagccttat 35911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 30722285 - 30722235
Alignment:
Q  298 agtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    |||||||| ||||||| || ||||||||||| |||||||||||||||||||    
T  30722285 agtcagcatttgccacgtaggcaaaaatgagacaaatcagcaagaaagtgg 30722235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 34934747 - 34934807
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||| ||||||||||| ||| ||||||||||| || |||| |||| |||||||||||||    
T  34934747 ttaccaaggaccaaaacccaaattcgctatatttgcagggacaaaaagcatattttagcct 34934807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 50164461 - 50164401
Alignment:
Q  408 taccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||| ||||||||||  |||||||| |||||| || ||||||||| ||||||||||||||    
T  50164461 taccaaggaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagcctt 50164401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 17976820 - 17976761
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||| ||| ||||||||||| || | ||||||| ||||||| ||||    
T  17976820 ttaccagggaccaaaacccaaattcgctatatttgcaggaaccaaaaccatatttaagcc 17976761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 37396840 - 37396899
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||| ||||||||||  ||| ||||||||||| || ||||||||| ||||||||||||    
T  37396840 ttaccaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 37396899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 469
Target Start/End: Original strand, 13074574 - 13074636
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    |||||||||||||||||  |||||||  |||||| || | |||||||| ||||||||||||||    
T  13074574 ttaccagggaccaaaactcaaactcgtcatatttgcaggaaccaaaaatatattttagcctta 13074636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 24422716 - 24422634
Alignment:
Q  266 gccacctagatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    ||||||| |||||||  | ||||  |||| ||||||||||  ||||||||| ||| ||||||| ||||| |||||||||||||    
T  24422716 gccacctggatgccacatgtacatgtttgcatagtcagcatatgccacataggcagaaatgagacaaattagcaagaaagtgg 24422634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 469
Target Start/End: Complemental strand, 27815500 - 27815438
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    |||||||||||||||||| ||| | ||||||||| || |||||| || ||||||| |||||||    
T  27815500 ttaccagggaccaaaacccaaattggctatatttgcagggaccagaaccatatttaagcctta 27815438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 461
Target Start/End: Original strand, 27816720 - 27816774
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattt 461  Q
    |||||||||||||||||| ||| | ||||||||| || ||||||||| |||||||    
T  27816720 ttaccagggaccaaaacccaaattggctatatttgcagggaccaaaaccatattt 27816774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 45979506 - 45979556
Alignment:
Q  417 ccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||  ||| ||||||||||| || |||||||||||||||||||||||    
T  45979506 ccaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcct 45979556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 48857197 - 48857247
Alignment:
Q  419 aaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctta 469  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||||| |||||    
T  48857197 aaaatctaaattcgttatatttgcaaggaccaaaaacatattttaacctta 48857247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 39162977 - 39162928
Alignment:
Q  315 taagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    ||||||||||  |||||||||||||||||||||||  |||| ||||||||    
T  39162977 taagcaaaaactagccaaatcagcaagaaagtggacccagggactttttt 39162928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 3936637 - 3936576
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  3936637 ttaccagggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctt 3936576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 6894010 - 6894069
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  6894010 ttaccagggaccaaaacctaaactcgtcatatttgcaaggaccaaaaacatattttagcc 6894069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 3954111 - 3954051
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||    
T  3954111 ttaccagggaccaaaacccaaattcgatatatttgcaaggaccaaaaacatattttagcct 3954051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 27571129 - 27571190
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||| ||||||| ||||||||||||||| || ||||||||| ||||||||||||||    
T  27571129 ttaccagggatcaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctt 27571190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 3938060 - 3938120
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||||||||| ||||||||| || |||| |||| |||||||||||||    
T  3938060 ttaccagggaccaaaacctaaacttgctatatttgcagggactaaaagcatattttagcct 3938120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 4565452 - 4565392
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| |||||||||||||||  | |||| ||||||||||||||||||    
T  4565452 ttaccagggaccaaaacccaaactcgctatatttgtagggactaaaaacatattttagcct 4565392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 31540555 - 31540495
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||| ||||||||| ||| ||| ||||||| || |||||||||||||||||||||||    
T  31540555 ttaccaggtaccaaaacccaaattcgttatatttgcagggaccaaaaacatattttagcct 31540495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 413 - 464
Target Start/End: Complemental strand, 27570109 - 27570058
Alignment:
Q  413 gggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
    |||| ||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  27570109 gggaacaaaacccaaactcgctatatttgcaaggaccaaaatcatattttag 27570058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 34911828 - 34911889
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||| ||||| ||||| | ||||||||||||||| || ||||||||| ||||||||||||||    
T  34911828 ttactagggatcaaaatccaaactcgctatatttgcagggaccaaaatcatattttagcctt 34911889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 476
Target Start/End: Complemental strand, 14809217 - 14809153
Alignment:
Q  412 agggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 476  Q
    ||||||||||| | ||| |||||||||||  | ||| |||||||||||||||| |||||||||||    
T  14809217 agggaccaaaatccaaattcgctatatttgtagggatcaaaaacatattttaggcttatttttat 14809153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 476
Target Start/End: Complemental strand, 15599818 - 15599755
Alignment:
Q  413 gggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 476  Q
    |||||||||||| ||| |||| ||||||  | ||||||||| ||||||||||||| ||||||||    
T  15599818 gggaccaaaacccaaattcgccatatttgtagggaccaaaagcatattttagcctaatttttat 15599755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 31541622 - 31541681
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||||||| |||||| ||| ||| ||||||| || ||| ||||||||||||||||||    
T  31541622 ttaccagggacaaaaaccaaaattcgttatatttgcagggatcaaaaacatattttagcc 31541681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 35605463 - 35605517
Alignment:
Q  300 tcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcag 354  Q
    ||||||| ||||| |||||| ||||||  |||||||||||||||||||| |||||    
T  35605463 tcagcacctgccatataagcgaaaatgcaccaaatcagcaagaaagtgggttcag 35605517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 15604058 - 15604114
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
    |||| ||||||||||||| |||||||| |||||| | ||||||||||||| |||||||    
T  15604058 ttactagggaccaaaacccaaactcgccatatttgc-aggaccaaaaacacattttag 15604114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 24195666 - 24195605
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  24195666 ttaccagggagcaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctt 24195605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 407 - 476
Target Start/End: Original strand, 31848144 - 31848213
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttat 476  Q
    |||||||||||||||||| ||| ||||||||||| || |||| |||||||||||||||||| ||||||||    
T  31848144 ttaccagggaccaaaacccaaattcgctatatttgcagggactaaaaacatattttagcctaatttttat 31848213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 35212127 - 35212066
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||| |||||||  |||||| || ||||||||||||||||||||||||    
T  35212127 ttaccagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattttagcctt 35212066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 479
Target Start/End: Complemental strand, 13419009 - 13418937
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttatatt 479  Q
    |||||||||||||| ||| ||| |||| |||||| || |||||||||||||||||||||||||  ||||||||    
T  13419009 ttaccagggaccaatacccaaattcgcaatatttgcagggaccaaaaacatattttagccttaagtttatatt 13418937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 25046240 - 25046300
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||| |||||||||||||    
T  25046240 ttaccatggaccaaaatctaaactcgccatatttgcaaggaccaaaatcatattttagcct 25046300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 474
Target Start/End: Original strand, 12385707 - 12385774
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 474  Q
    |||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||| ||||| ||||    
T  12385707 ttaccagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatttt 12385774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 474
Target Start/End: Complemental strand, 38742240 - 38742173
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 474  Q
    ||||| |||||||||||| ||||||||||||||| || |||| |||||||||||||| |||| |||||    
T  38742240 ttaccggggaccaaaacccaaactcgctatatttgcagggactaaaaacatattttaacctttttttt 38742173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 41693704 - 41693643
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||| ||| |||| |||||| || ||| ||||||||||||||||||||    
T  41693704 ttaccagggaccaaaacccaaattcgccatatttgcagggatcaaaaacatattttagcctt 41693643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 42255017 - 42254956
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||  |||||||| |||||| || ||||||||| ||||||||||||||    
T  42255017 ttaccagggaccaaaactcaaactcgccatatttacagggaccaaaagcatattttagcctt 42254956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 5611507 - 5611567
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||| |||||| |||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  5611507 ttacgagggacgaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcct 5611567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 17066484 - 17066424
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||||||||||||| || |||  |||| |||||||||||||    
T  17066484 ttaccagggaccaaaacccaaactcgctatatttgcagggattaaaagcatattttagcct 17066424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 32197909 - 32197969
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||| ||||||||||| ||| ||||||||||| || ||||||||| |||||||||||||    
T  32197909 ttaccaaggaccaaaacccaaattcgctatatttgcagggaccaaaagcatattttagcct 32197969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 41694955 - 41695015
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||  ||||||||||||||| || |||  ||||||||||||||||||    
T  41694955 ttaccagggaccaaaactcaaactcgctatatttgcagggatgaaaaacatattttagcct 41695015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 414 - 465
Target Start/End: Original strand, 31489942 - 31489993
Alignment:
Q  414 ggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    ||||||||||| ||||||| ||||||| || |||||||||||||||||||||    
T  31489942 ggaccaaaacccaaactcgttatatttgcagggaccaaaaacatattttagc 31489993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 474
Target Start/End: Original strand, 36749247 - 36749314
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 474  Q
    |||| ||||||||||||  |||||||  |||||| ||| ||||||||||||||||||||||| |||||    
T  36749247 ttactagggaccaaaactcaaactcgtcatatttgcaatgaccaaaaacatattttagcctttttttt 36749314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 11217071 - 11217132
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||||||||||||   ||||||||||||||| || ||||||||| ||||||||| ||||    
T  11217071 ttaccagggaccaaaattcaaactcgctatatttgcagggaccaaaagcatattttaacctt 11217132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 32543658 - 32543581
Alignment:
Q  287 caactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    |||||||| ||| ||| ||  ||||||||||||||||||||  |||||||||||||||||| | ||||| ||| ||||    
T  32543658 caactttgcatactcaacatctgccacataagcaaaaatgattcaaatcagcaagaaagtgtactcagggactatttt 32543581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 554402 - 554362
Alignment:
Q  308 tgccacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  554402 tgccacataagcaaaaatgagccaaatcaacaagacagtgg 554362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 12933478 - 12933418
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    ||||||||||||||||   |||||| |||||||| || ||||||||| |||||||||||||    
T  12933478 ttaccagggaccaaaattcaaactcactatatttgcagggaccaaaagcatattttagcct 12933418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 24197103 - 24197163
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||| ||||||||  ||| ||||||||||| || ||||||||| |||||||||||||    
T  24197103 ttaccaggaaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcct 24197163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 31489836 - 31489876
Alignment:
Q  308 tgccacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  31489836 tgccacataggcaaaaatgagacaaatcagcaagaaagtgg 31489876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 463
Target Start/End: Original strand, 32544774 - 32544830
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatttta 463  Q
    |||||| ||||||||||| ||| ||||||||||| || ||||||||| |||||||||    
T  32544774 ttaccaaggaccaaaacccaaattcgctatatttgcagggaccaaaatcatatttta 32544830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 468
Target Start/End: Complemental strand, 554298 - 554243
Alignment:
Q  413 gggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||| ||||||||||||||| || ||||||| |  |||||||||||||    
T  554298 gggaccaaaacccaaactcgctatatttgcagggaccaatattatattttagcctt 554243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 39619800 - 39619851
Alignment:
Q  416 accaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    ||||||||| |||||||| |||||| || ||||||||| |||||||||||||    
T  39619800 accaaaacccaaactcgccatatttgcatggaccaaaagcatattttagcct 39619851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 9454310 - 9454236
Alignment:
Q  273 agatgccatgtatacaactttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 347  Q
    |||||||| || ||||| |||  | |||||| || ||||||||||||||||||  ||| ||||||||||||||||    
T  9454310 agatgccacgtgtacaagtttacacagtcaggacctgccacataagcaaaaatatgcctaatcagcaagaaagtg 9454236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 9454860 - 9454926
Alignment:
Q  298 agtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    ||||||||| |  ||||| || ||||||| ||||||||||||||||||||| |||||| ||| ||||    
T  9454860 agtcagcacctatcacatgagaaaaaatgtgccaaatcagcaagaaagtgggttcagggactatttt 9454926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 31853607 - 31853549
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    |||| ||||||||||| | |||||| | |||||| || |||||||||||||||||||||    
T  31853607 ttactagggaccaaaatccaaactcacaatatttgcagggaccaaaaacatattttagc 31853549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 465
Target Start/End: Complemental strand, 32196739 - 32196685
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    |||||||||||| | |||  |||||||||| || |||||||||||||||||||||    
T  32196739 cagggaccaaaatccaaatacgctatatttgcagggaccaaaaacatattttagc 32196685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 476
Target Start/End: Complemental strand, 35837955 - 35837914
Alignment:
Q  435 atattttcaaggaccaaaaacatattttagccttatttttat 476  Q
    |||||| || ||||||||| ||||||||||||||||||||||    
T  35837955 atatttgcagggaccaaaaccatattttagccttatttttat 35837914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 466
Target Start/End: Complemental strand, 36748250 - 36748198
Alignment:
Q  413 gggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||| |||||| | |||||| || ||||||||||||||||||||||    
T  36748250 gggaccaaaacccaaactctc-atatttgcagggaccaaaaacatattttagcc 36748198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 36748365 - 36748316
Alignment:
Q  299 gtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    |||||||  ||||||||| ||||||||||| ||||||||||| |||||||    
T  36748365 gtcagcatctgccacataggcaaaaatgagacaaatcagcaaaaaagtgg 36748316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 476
Target Start/End: Complemental strand, 41053873 - 41053832
Alignment:
Q  435 atattttcaaggaccaaaaacatattttagccttatttttat 476  Q
    |||||| || ||||||||| ||||||||||||||||||||||    
T  41053873 atatttgcagggaccaaaaccatattttagccttatttttat 41053832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 43869912 - 43869965
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatatt 460  Q
    |||||||||||||||||| ||| | ||||||||| || ||||||||| ||||||    
T  43869912 ttaccagggaccaaaacccaaattggctatatttgcagggaccaaaaccatatt 43869965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 44568381 - 44568320
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 472  Q
    ||||||| |||||| ||||  | ||||||| || ||||||||| ||||||||||||||||||    
T  44568381 cagggactaaaaccaaaacgagttatatttgcagggaccaaaaccatattttagccttattt 44568320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 11522 - 11586
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatt 471  Q
    |||||||||||||||||| |||  |||||||||| || |||||||||||||||||||||||||||    
T  11522 ttaccagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagccttatt 11586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 10374 - 10315
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||| ||||||||||  ||| ||||||||||| || ||||||||| ||||||||||||    
T  10374 ttaccaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 10315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 29291414 - 29291350
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttta 475  Q
    |||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||| |||||||    
T  29291414 cagggaccaaaacccaaactcgccatatttgcaaggaccaaaagcatattttagcctgattttta 29291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 17517309 - 17517369
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||  |||||||| |||||| || |||||||||||||||||||||||    
T  17517309 ttaccagggaccaaaactcaaactcgccatatttgcagggaccaaaaacatattttagcct 17517369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 34998141 - 34998201
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| ||||||||||||||| || ||| ||||| |||||||||||||    
T  34998141 ttaccagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttagcct 34998201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 411 - 474
Target Start/End: Original strand, 1974156 - 1974219
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattttt 474  Q
    |||||||||||||  ||| ||||||||||| |||||| |||||||||||||||||| |||||||    
T  1974156 cagggaccaaaactcaaattcgctatatttgcaaggatcaaaaacatattttagccatattttt 1974219  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 18810591 - 18810532
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||||||    
T  18810591 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcc 18810532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 21165305 - 21165246
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||  ||||||||||||||| || ||||||||| ||||||||||||    
T  21165305 ttaccagggaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagcc 21165246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 16995510 - 16995449
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||||||||| ||| ||  ||||||| || ||||||||||||||||||||||||    
T  16995510 ttaccagggaccaaaacccaaattctttatatttgcagggaccaaaaacatattttagcctt 16995449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 21953265 - 21953205
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||| | ||| ||||||||||| || ||||||||| |||||||||||||    
T  21953265 ttaccagggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagcct 21953205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 411 - 482
Target Start/End: Complemental strand, 17516217 - 17516147
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttatattaaa 482  Q
    |||||||||||||| |||||| | |||||| || |||||||||||||||||||| ||| ||||||| |||||    
T  17516217 cagggaccaaaacccaaactcaccatatttgcagggaccaaaaacatattttagtctt-tttttattttaaa 17516147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 20897497 - 20897556
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||| ||| || |||||||| || ||||||||| ||||||||||||    
T  20897497 ttaccagggaccaaaacccaaattcactatatttgcagggaccaaaaccatattttagcc 20897556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 17000179 - 17000233
Alignment:
Q  310 ccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    |||| |||||||||||| ||||||||||||||||||||| | |||| ||||||||    
T  17000179 ccacctaagcaaaaatgtgccaaatcagcaagaaagtgggtccagggactttttt 17000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 26421724 - 26421785
Alignment:
Q  289 actttgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggat 350  Q
    |||||| ||||||| ||  ||| ||||| ||||||||||| |||||||||||||||||||||    
T  26421724 actttgcatagtcatcatctgctacataggcaaaaatgagacaaatcagcaagaaagtggat 26421785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 3276426 - 3276366
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||| |||||| |||| | ||| ||||||||||| || |||||||||||||||||||||||    
T  3276426 ttactagggactaaaatccaaattcgctatatttgcagggaccaaaaacatattttagcct 3276366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 14656229 - 14656269
Alignment:
Q  435 atattttcaaggaccaaaaacatattttagccttattttta 475  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  14656229 atatttgcaaggaccaaaaccatattttagccttattttta 14656269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 1972459 - 1972400
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    ||||||| ||| |||||| ||| ||||| ||||| || ||||||||||||||||||||||    
T  1972459 ttaccagagactaaaacccaaattcgctttatttgcagggaccaaaaacatattttagcc 1972400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 477
Target Start/End: Original strand, 30253547 - 30253609
Alignment:
Q  415 gaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttatttttata 477  Q
    |||||||||  | ||||||| ||||| || |||||||||||||||||||| ||| ||||||||    
T  30253547 gaccaaaactcatactcgctgtatttgcagggaccaaaaacatattttagtcttttttttata 30253609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 1171655 - 1171712
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||||||| | ||||||| ||||||| || ||| ||||||||||||||| ||||    
T  1171655 cagggaccaaaaaccaaactcgttatatttgcagggatcaaaaacatattttaacctt 1171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 3279403 - 3279440
Alignment:
Q  311 cacataagcaaaaatgagccaaatcagcaagaaagtgg 348  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  3279403 cacataagcaaaaatgagccaaatcagtacgaaagtgg 3279440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 3279499 - 3279560
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||||||| |||||||   ||||||||||||||| || ||| ||||||||||||||| ||||    
T  3279499 ttaccaggaaccaaaattcaaactcgctatatttgcagggatcaaaaacatattttaacctt 3279560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 20391273 - 20391212
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    |||| ||||||||||||| ||| || |||||||| || ||||||||| ||||||||| ||||    
T  20391273 ttacgagggaccaaaacccaaattcactatatttgcagggaccaaaagcatattttaacctt 20391212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 25440673 - 25440730
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttag 464  Q
    ||||||||||||||||   |||||||| ||||||  |||||||||||| |||||||||    
T  25440673 ttaccagggaccaaaattcaaactcgccatatttgtaaggaccaaaaatatattttag 25440730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 26421843 - 26421904
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcctt 468  Q
    ||||||||||| |||||  ||| ||||||||||| ||  |||||||||||| ||||||||||    
T  26421843 ttaccagggactaaaactcaaattcgctatatttgcagagaccaaaaacatgttttagcctt 26421904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 472
Target Start/End: Original strand, 120985 - 121050
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagccttattt 472  Q
    |||||||||||||||||| ||||||| ||||||| || ||||||||| |||||||||||| |||||    
T  120985 ttaccagggaccaaaacccaaactcgttatatttgcagggaccaaaagcatattttagccgtattt 121050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 119652 - 119593
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||  ||| ||||||||||| || ||||||||| ||||||||||||    
T  119652 ttaccagggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 119593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 30907 - 30967
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| |||||||||||||    
T  30907 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaaccatattttagcct 30967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 29788 - 29728
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||| | ||||||| | ||||| || ||||||||| |||||||||||||    
T  29788 ttaccagggaccaaaatccaaactcgttttatttgcagggaccaaaagcatattttagcct 29728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 345897 - 345957
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||| ||||||||||||| ||| ||||||||||| || |||||||||||||||||||||||    
T  345897 ttactagggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagcct 345957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 376261 - 376325
Alignment:
Q  300 tcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtggattcaggaactttttt 364  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||| |||| ||| ||||    
T  376261 tcagcacttgccacataagcaaaaatgaaccaaatcaaaaagaaagtggatccagggactatttt 376325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 344996 - 344936
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||||||||||||||| |||||||| |||||| || ||||||||| ||||||| |||||    
T  344996 ttaccagggaccaaaacccaaactcgccatatttgcagggaccaaaatcatatttgagcct 344936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 374394 - 374335
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||| ||||||||||||| ||||||||||||||| || ||| ||||| ||||||||||||    
T  374394 ttacaagggaccaaaacccaaactcgctatatttgcagggatcaaaatcatattttagcc 374335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 376381 - 376429
Alignment:
Q  419 aaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    |||||| ||||||||||||||| || ||||||||| |||||||||||||    
T  376381 aaaacccaaactcgctatatttgcagggaccaaaagcatattttagcct 376429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 431 - 490
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcc 466  Q
    |||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||||||    
T  431 ttaccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcc 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 202762 - 202699
Alignment:
Q  285 tacaactt-tgtatagtcagcacttgccacataagcaaaaatgagccaaatcagcaagaaagtg 347  Q
    |||||||| |||||||||| ||  ||||||||||||||||| | ||||||||||||||||||||    
T  202762 tacaacttatgtatagtcatcaagtgccacataagcaaaaaggtgccaaatcagcaagaaagtg 202699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 202638 - 202578
Alignment:
Q  407 ttaccagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagcct 467  Q
    ||||| |||||||||| | ||||||| ||||||| || ||||||||| |||||||||||||    
T  202638 ttacccgggaccaaaatccaaactcgttatatttgcagggaccaaaagcatattttagcct 202578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 465
Target Start/End: Original strand, 42759 - 42813
Alignment:
Q  411 cagggaccaaaacctaaactcgctatattttcaaggaccaaaaacatattttagc 465  Q
    |||||||||||||  |||||||| |||||| |||||||||||| |||||||||||    
T  42759 cagggaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 42813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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