View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_high_93 (Length: 257)
Name: NF0583_high_93
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_93 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 56929 - 57172
Alignment:
| Q |
14 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
56929 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctatgtacg |
57028 |
T |
|
| Q |
114 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacgataacttccgacaccata |
213 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57029 |
aggtatgacgacatcatctaggcgctctttaatgtccctaaaatctgaaattactgccggtatgttccaggttccattaacgataacttccgacaccata |
57128 |
T |
|
| Q |
214 |
cctttcatatgtccgtgaaaatcaacatcaatattcatcaaatc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57129 |
cctttcatatgtccgtgaaaatcaacatcaatattcatcaaatc |
57172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 21879074 - 21879314
Alignment:
| Q |
14 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
21879074 |
gaacctgtgatggaggacgcatgaaagagctagaaatcttcgaattcaaggctccatccaaagagtgcttccaaaccagcacatccctgagttgcgtacg |
21879173 |
T |
|
| Q |
114 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacgataacttccgacaccata |
213 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21879174 |
agatatgacgacagcatctaggctctctttaatgtccccaaaatctgaaataactgcaggtatgttccaggttccattaacaataacttccgacaccata |
21879273 |
T |
|
| Q |
214 |
cctttcatatgtccgtgaaaatcaacatcaatattcatcaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21879274 |
cctttcatatgtccgtgaaaatcaacattaatattcatcaa |
21879314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 1925881 - 1926124
Alignment:
| Q |
14 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1925881 |
gaacctgtgatggaggacgcatgaaagagctagcattcttcgaattcaagactccatccaaagagtgcttccaaaccagcacatccctgagatgtgtacg |
1925980 |
T |
|
| Q |
114 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacgataacttccgacaccata |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1925981 |
aggtatgacgacagcatctaggcgctcttgaatgtccccaaaatctgaaatagctgcaggtatgttccaggttccattaacaataacttccgacaccata |
1926080 |
T |
|
| Q |
214 |
cctttcatatgtccgtgaaaatcaacatcaatattcatcaaatc |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1926081 |
cctttcatatgtccatgaaaatcaacatcaatattcatcaaatc |
1926124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 20795 - 21035
Alignment:
| Q |
14 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
20795 |
gaacctgtgaaggaggacgcatgaaagagcgagcaagcttggaattcaagactccatccaaagagtgcttccaaaccagcacatccctgagttgagtacg |
20894 |
T |
|
| Q |
114 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacgataacttccgacaccata |
213 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
20895 |
aggtaagacgacaacatctaggcgctctttaatgtccccaaaatctgcaatagctgcaggtatgttccaggtaccattaacaataacttccgacaccata |
20994 |
T |
|
| Q |
214 |
cctttcatatgtccgtgaaaatcaacatcaatattcatcaa |
254 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20995 |
cctttcatatgtccatgaaaatcaacatcaatattcatcaa |
21035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 21812014 - 21811774
Alignment:
| Q |
14 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
21812014 |
gaacctgtgaaggaggacgcatgaaagagcgagcaagcttggaattcaagactccatccaaagagtgcttccaaaccagcacatccctgagttgagtacg |
21811915 |
T |
|
| Q |
114 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacgataacttccgacaccata |
213 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
21811914 |
aggtaagacgacaacatctaggcgctctttaatgtccccaaaatctgcaatagctgcaggtatgttccaggtaccattaacaataacttccgacaccata |
21811815 |
T |
|
| Q |
214 |
cctttcatatgtccgtgaaaatcaacatcaatattcatcaa |
254 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21811814 |
cctttcatatgtccatgaaaatcaacatcaatattcatcaa |
21811774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 7557 - 7754
Alignment:
| Q |
13 |
agaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtac |
112 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
7557 |
agaacctgtgcttgaggacgcatgaaagagctagctagcttcgaattcaagtttccatccaaa-agtgcttccaaaccaggacatccatgagcggtgtac |
7655 |
T |
|
| Q |
113 |
gaggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacgataacttccgacacca |
211 |
Q |
| |
|
|||||| ||||||||| || || | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7656 |
gaggtaggacgacagcgtcgagacgctctctaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaactataacttcggacacca |
7754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 14858 - 14629
Alignment:
| Q |
28 |
ggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacgaggtatgacgacag |
127 |
Q |
| |
|
||||||| ||||||||| |||| ||||| |||| |||||||| ||||||||| ||||||| ||||||||| |||| | |||||||||| ||| |||| |
|
|
| T |
14858 |
ggacgcaagaaagagcttgcaagcttcgtgttcattgttccatctaaagagtgcatccaaactagcacatccacgagcggggtacgaggtaggacaacag |
14759 |
T |
|
| Q |
128 |
catctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacgataacttccgacaccatacctttcatatgtcc |
227 |
Q |
| |
|
| || |||| |||| |||||| ||||||||| |||| ||| ||| |||||||||||||| |||||||||||||||||| | |||||||||| | || |
|
|
| T |
14758 |
cctcgaggcgctctctaatgttcccaaaatcggaaagcgctgaaggcatgttccaggttccgataacgataacttccgacatgaaacctttcataagacc |
14659 |
T |
|
| Q |
228 |
gtgaaaatcaacatcaatattcatcaaatc |
257 |
Q |
| |
|
|||||||||| ||||||| |||||||||| |
|
|
| T |
14658 |
gtgaaaatcagtatcaatactcatcaaatc |
14629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 128280 - 128202
Alignment:
| Q |
14 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccag |
92 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| || ||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
128280 |
gaacctgtgaaggaggacgcaggaaagagctagccattttctaattcaagactccatccaaagagtgcatccaaaccag |
128202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 306097 - 306019
Alignment:
| Q |
14 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccag |
92 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| || ||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
306097 |
gaacctgtgaaggaggacgcaggaaagagctagccattttctaattcaagactccatccaaagagtgcatccaaaccag |
306019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1607 times since January 2019
Visitors: 3849