View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_high_95 (Length: 255)
Name: NF0583_high_95
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_high_95 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 54416735 - 54416485
Alignment:
| Q |
6 |
aggagcagagaaaagcaaacgttctgctaacaccaaaattctttgacaaacggaaagtataacccgttggccaatatagggcgcacttccaagtttacgg |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54416735 |
aggatcagagaaaagcaaacgttctgctaacaccaaaattctttgacaaactgaaagtataacccgttggccaatatagggcgcacttccaagtttacgg |
54416636 |
T |
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| Q |
106 |
accaaatgctgaatacagaactgtgcattggtgccactgtcttgagatcctacgaagatacgattttgtaaagat-nnnnnnnnggaacaaaaagaccat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54416635 |
accaaatgctgaatacagaactgtgcattggtgccactgtcttgagatcctacgaagatacgattttgtaaagataaaaaaaaaggaacaaaaagaccat |
54416536 |
T |
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| Q |
205 |
taattagagtagataagaaatgaaaatagtatttaatggttaagcttcaga |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54416535 |
taattagagtagataagaaatgaaaatagtatttaatggttaagcttcaga |
54416485 |
T |
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