View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_low_1 (Length: 950)
Name: NF0583_low_1
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_1 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 372 - 950
Target Start/End: Original strand, 21144596 - 21145174
Alignment:
| Q |
372 |
attttggtgggattctcattttagggagatgaaggaatggaatccaagcttagtggccagcaaaataactgtttggattaaaatcctaagtttaccagtt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21144596 |
attttggtgggattctcattttagggagatgaaggaatggaatccaagcttagtggccagcaaaagaactgtttggattaaaatcctaagtttaccagtt |
21144695 |
T |
|
| Q |
472 |
catgtctgggatgaagaggctttcaagcagattggagaccaatttggtgagttcttggattttgatgaggatacaattttaaggaggatattggatgtgg |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21144696 |
catgtctgggatgaagaggctttcaagcagattggagaccaatttggtgagttcttggattttgatgaggatacaattttaaggaggatattggatgtgg |
21144795 |
T |
|
| Q |
572 |
ctagaatcaaaatctacactattggttggataataggcaaatcaaagaggtggttgaggaggtgtggaattcacaacatttaacgtgatggatgggattt |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21144796 |
ctagaatcaaaatctacactattggttggataataggcaaatcaaagaggtggttgaggaggtgtggaattcacaacatttaacgtgatggatgggattt |
21144895 |
T |
|
| Q |
672 |
gtgttaaaagagaaactaaaaggggttaaaggaaggcttagagagtggaacaaggaggagcatggttcgatgtaagagagaatttctaggttaaaagaag |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21144896 |
ctgttaaaagagaaactaaaaggggttaaaggaaggcttagagagtggaacaaggaggagtatggttcgatgtaagagagaatttctaggttaaaagaag |
21144995 |
T |
|
| Q |
772 |
atgtacaagaggtggatttaaggggagagttgtcgttgttgagtgatgaagatgtccgagtctgaaaagaaaaaatttgtgctttatggagtcttcttaa |
871 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21144996 |
atatacaagaggtggatttaaggggagagttgtcgttgttgaatgatgaagatgtccgagtccgaaaagaaaatttttgtgctttatggagtcttcttaa |
21145095 |
T |
|
| Q |
872 |
agcaaaagattcattggtggtgcaaagatcccgtatcaagtggcttaaaaaaggggattctaacaccaactttttccat |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21145096 |
agcaaaagattcattggtggtgcaaagatctcgtatcaagtggcttaaagaaggggattctaacaccaactttttccat |
21145174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2860 times since January 2019
Visitors: 3829