View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_100 (Length: 316)
Name: NF0583_low_100
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 56278752 - 56279058
Alignment:
| Q |
1 |
aatgttttatgatgagtttattttctatttctttgataaaagaaggactaaggagtgttctaggacttctaaaacagttagttctcacaagcacaacaca |
100 |
Q |
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| T |
56278752 |
aatgttttatgatgagtttattttctatttctttgataaaagaaggactaaggagtgttctaggacttctaaaacagttagttctcacaagcacaacaca |
56278851 |
T |
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| Q |
101 |
tgctatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattcca |
200 |
Q |
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| T |
56278852 |
tgctatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattcca |
56278951 |
T |
|
| Q |
201 |
gtatacaattaaaatagctccctgcaacgcctacatccatctcacccaacataactactgaactgatcataactctgccataatgcaaaatgattcagca |
300 |
Q |
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| T |
56278952 |
atatacaattaaaatagctccctgcaacgcctacatccatctcacccaacataactactgaactgatcataactctgccataatgcaaaatgattcagca |
56279051 |
T |
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| Q |
301 |
gtataat |
307 |
Q |
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||||||| |
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| T |
56279052 |
gtataat |
56279058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 252
Target Start/End: Original strand, 46571387 - 46571641
Alignment:
| Q |
3 |
tgttttatgatgagtttattttctatttctttgataaaagaaggactaaggagtgttctaggacttctaaaacagttagttctcacaagcacaacacatg |
102 |
Q |
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| T |
46571387 |
tgttttatgatgaatttattttctatttatttgataaa-gaaggactaagaagtgtcataggattgcaatgaa---tatttctaacgagcacaacacatg |
46571482 |
T |
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| Q |
103 |
ctatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattcca-- |
200 |
Q |
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| T |
46571483 |
ccat----gtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcaccaaattctaccagccccgtgcattggccaattccaaa |
46571578 |
T |
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| Q |
201 |
-----------gtatacaattaaaatagctccctgcaacgcctacatccatctcacccaacat |
252 |
Q |
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| T |
46571579 |
agacagcacccaaatacaattagaatagctccctgcaatgcctacatccatctcacccaacat |
46571641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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