View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_103 (Length: 311)
Name: NF0583_low_103
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 38011650 - 38011455
Alignment:
| Q |
11 |
atgaagcaaaataaccacgacaaagtataannnnnnnct---atagaagcaaaatggatatgagtctcaacactataatgtgacacagaatgaccatttt |
107 |
Q |
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| T |
38011650 |
atgaagcaaaatgaccacgacaaagtataatttttttcttctacagaagcaaaatggatatgagtctcaacagtataatgtgacacaaaatgaccatttt |
38011551 |
T |
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| Q |
108 |
tagtagtatatgaaacctcaggtaagttttat-nnnnnnntgaccatttgacgtgctctaaaagttttttaaattaagtttagccaatgatataagtttt |
206 |
Q |
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| T |
38011550 |
tagtagtatatgaaaccttaagtaggttttataaaaaaaatgaccatttg----gctctaatagttttttaaataaattttaggcaatgatataagtttt |
38011455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 38011488 - 38011409
Alignment:
| Q |
203 |
ttttcaattaattttagccaatgatataagttttttcatctcaatatatttaatatatggttatgtataaataatagaac |
282 |
Q |
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| T |
38011488 |
ttttaaataaattttaggcaatgatataagttttttcatctcaatatatttaatacatggttatgtataaataatagaac |
38011409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 5360961 - 5361032
Alignment:
| Q |
49 |
tatagaagcaaaatggatatgagtctcaacactataatgtgacacagaatgaccatttttagtagtatatgaaa |
122 |
Q |
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| T |
5360961 |
tatagaagcaaaatggat--gagtctcaacaatataatgtgatacagaaggaccatttttagtagtatatgaaa |
5361032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 5403596 - 5403659
Alignment:
| Q |
203 |
ttttcaattaattttagccaatgatataagttttttcatctcaatatatttaatatatggttat |
266 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
5403596 |
ttttaaattaattttagccaatgatatcagttttttcatgtcaatatatttaatacatggttat |
5403659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 5361098 - 5361167
Alignment:
| Q |
203 |
ttttcaattaattttagccaatgatataagttttttcatctcaatatatttaatatatggttatgtataa |
272 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||| |||| |
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| T |
5361098 |
ttttaaattaattttagccaatgatattagttttttcatgacaatatatttaatacatagttatgaataa |
5361167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 5361076 - 5361131
Alignment:
| Q |
151 |
catttgacgtgctctaaaagttttttaaattaagtttagccaatgatataagtttt |
206 |
Q |
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| T |
5361076 |
catttgacgtgctctaatggttttttaaattaattttagccaatgatattagtttt |
5361131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 5403593 - 5403629
Alignment:
| Q |
170 |
gttttttaaattaagtttagccaatgatataagtttt |
206 |
Q |
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|||||||||||||| ||||||||||||||| |||||| |
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| T |
5403593 |
gttttttaaattaattttagccaatgatatcagtttt |
5403629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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