View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_106 (Length: 309)

Name: NF0583_low_106
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_106
NF0583_low_106
[»] chr8 (1 HSPs)
chr8 (1-222)||(43575793-43576014)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43575793 - 43576014
Alignment:
1 tgtaattttttctattttgtgtgataactctaccatggcgtacttttcaaatatgaaaaagatgaattagatactataataattagaaaatatatttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43575793 tgtaattttttctattttgtgtgataactctaccatggcatacttttcaaatatgaaaaagatgaattagatactataataattagaaaatatatttttc 43575892  T
101 atatatatcattaaggttagatattatgacaggacttttgcacgaaaaagaggtacctatgaacataattttctttggtaataactcttcctcaatccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43575893 atatatatcattaaggttagatattatgacaggacttttgcacgaaaaagaggtacctatgaacataattttctttggtaataactcttcctcaatccaa 43575992  T
201 gactcaggttatatggggaaaa 222  Q
    ||||||||||||||||||||||    
43575993 gactcaggttatatggggaaaa 43576014  T

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