View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_116 (Length: 291)
Name: NF0583_low_116
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_116 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 24136560 - 24136810
Alignment:
| Q |
12 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
111 |
Q |
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| T |
24136560 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcgtacccctgtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
24136659 |
T |
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| Q |
112 |
caacacatgtgcttaaagcaaacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacca |
211 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24136660 |
cagcacatgtgcttaaggcaaacataaggtagatctatttaaatttttgccgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacca |
24136759 |
T |
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| Q |
212 |
gtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgttga |
262 |
Q |
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| T |
24136760 |
gtcttagcctaaccagcaataattgcttcccaagatgcacaatcgcgttga |
24136810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 24134246 - 24134493
Alignment:
| Q |
12 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
111 |
Q |
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| T |
24134246 |
atgaaaaggaatgggtgaagggtggaaaggacaacataccaggcccctgtcttcaccgcctatccatgaagttgtttccttaacaccaaagcagccatac |
24134345 |
T |
|
| Q |
112 |
caacacatgtgcttaaa-gcaaacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacc |
210 |
Q |
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| T |
24134346 |
cagcacatgtgctcaaatgacaacataatgtatatctacataaactttcgccatcccttttcatcttcaccagcatgtccatagcttcttcataatgacc |
24134445 |
T |
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| Q |
211 |
agtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcg |
258 |
Q |
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| T |
24134446 |
agtctgagcctaaccaccaataattgccacccaagatacacaatcgcg |
24134493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 24134080 - 24134216
Alignment:
| Q |
80 |
aagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagcaa-acataaggtagatctatttaaatttttgtcgtcccttttcatcttc |
178 |
Q |
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|||| ||||||||| || ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| | ||| | ||||||||||||||||| |
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| T |
24134080 |
aagttgtttccctagcatgaaagcagccttacgaacacatgtgctcaaagcaccacataaggtagatctatttacactttcgccgtcccttttcatcttc |
24134179 |
T |
|
| Q |
179 |
accagcatgtccatagcttattcatagtgaccagtct |
215 |
Q |
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| T |
24134180 |
accagcatgtccataacttcttcatagtgatcagtct |
24134216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 60 - 258
Target Start/End: Complemental strand, 45149295 - 45149096
Alignment:
| Q |
60 |
gtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaatttt |
158 |
Q |
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||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||| ||| |
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| T |
45149295 |
gtcttcaccgcctgtccatgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttt |
45149196 |
T |
|
| Q |
159 |
tgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcg |
258 |
Q |
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|| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | | ||||| ||||||||||| |||||||| | |||||||| |
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| T |
45149195 |
tgccgtcccttttcatcttcaccagcatgtgcataactttttcatagtgaccagtctgagcataaccagcaataattgccgcccaagatacacaatcgcg |
45149096 |
T |
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