View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_118 (Length: 290)
Name: NF0583_low_118
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_118 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 1971601 - 1971743
Alignment:
| Q |
97 |
cgatgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccacgacgtactttggtgttctgaaggaagcttttgggtct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
1971601 |
cgatgtgctcgctgaagtttctgttgattttctcatgcgttttacgcatgccggtgtaaccac-acgtactttggtgttatgaaggaagcttttgggtct |
1971699 |
T |
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| Q |
197 |
gttggagctttgtttatcgcggtgagttttgtttatttttaatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1971700 |
gttggagctttgtttatcgcggtgagttttgtttatttttaatt |
1971743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 19962582 - 19962725
Alignment:
| Q |
97 |
cgatgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccacgacgtactttggtgttctgaaggaagcttttgggtct |
196 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
19962582 |
cgatgtactcgctgaagtttttgttgattttctcatgcgttttacacatgcccgtgtaaccacgacgtactttggtgttatgaaggaagcttttgagtct |
19962681 |
T |
|
| Q |
197 |
gttggagctttgtttatcgcggtgagttttgtttatttttaatt |
240 |
Q |
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| T |
19962682 |
gttggagctttgtttatcacggtgagttttgtttatttttaatt |
19962725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 207
Target Start/End: Original strand, 32394973 - 32395079
Alignment:
| Q |
101 |
gtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccacgacgtactttggtgttctgaaggaagcttttgggtctgttg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| |||| |
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| T |
32394973 |
gtgctcgccgaagtttctgttgattttctcatgcgttttacacatgctggtgtaaccacgacatactctggtgttatgaaggaagcttttgggtccgttg |
32395072 |
T |
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| Q |
201 |
gagcttt |
207 |
Q |
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||||||| |
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|
| T |
32395073 |
gagcttt |
32395079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 32392913 - 32393016
Alignment:
| Q |
100 |
tgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccacgacgtactttggtgttctgaaggaagcttttgggtctgtt |
199 |
Q |
| |
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|||||| ||||||||||| || ||||||||||||||||||||| | || ||||||| || ||||| | |||| ||| |||||||||||| |||||| |
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| T |
32392913 |
tgtgcttgctgaagtttcagtggattttctcatgcgttttacagaagcaggtgtaaagacaacgtatgctagtgtgatgagggaagcttttggatctgtt |
32393012 |
T |
|
| Q |
200 |
ggag |
203 |
Q |
| |
|
|||| |
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|
| T |
32393013 |
ggag |
32393016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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