View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_12 (Length: 729)
Name: NF0583_low_12
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 423 - 719
Target Start/End: Original strand, 34259822 - 34260118
Alignment:
| Q |
423 |
ggtacaggaagcgtgctgcgagtgatacttctgttcctgatgctgcaaataaagccgaaatttatgctcaaaggttgtaatgtctgtttttatcctaagc |
522 |
Q |
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| T |
34259822 |
ggtacaggaagcgtgctgcgagtgatacttctgttcctgatgctgcaaataaagccgaaatttatgctcaaaggttgtaatgtctgtttttatcctaagc |
34259921 |
T |
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| Q |
523 |
aattcaaattgttgttaattgtaatattgaatcttattttggttcatttctttcaaaaaggtatgctaaaatacttgaaggtatgaaggaagatcctgca |
622 |
Q |
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| T |
34259922 |
aattcaaattgttgttaattgtaatattgaatcttattttggttcatttctttcaaaaaggtatgctaaaatacttgaagatatgaaggaagatcctgca |
34260021 |
T |
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| Q |
623 |
agtcatggaaatcctcttgatatccttgtatgttctttaacagaacttcgtacgcaaaaaatacaatatttgatatagcctgatttcctcttctgtg |
719 |
Q |
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| T |
34260022 |
agtcatggaaatcctcttgatatccttgtatgttcttaaacagaacttcgtacgcaaaaaatacaatatttgatatagcctgatttccccttctgtg |
34260118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 104 - 368
Target Start/End: Original strand, 34259503 - 34259767
Alignment:
| Q |
104 |
tactttatgagtaaactacattgtgactgaactgaaagtgaaatgtatatttatcagaagaagaagcaatgacaattagtacaccactgttggtgagatt |
203 |
Q |
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| T |
34259503 |
tactttatgagtaaactacattgtgactgaactgaaagtgaaatgtatatttatcagaagaagaagcaatgacaattagtacaccacagttggtgagatt |
34259602 |
T |
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| Q |
204 |
ccctttgttgatggatgatactgacactaccaattattcagcatgcaccattccttggaggctcccttctgatgatccaaaagtccccactcccactgag |
303 |
Q |
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| T |
34259603 |
ccctttgttgatggatgatagtgacactaccaattattcagcatgcaccattccttggaggctcccttctgatgatccaaaagtccccactcccactgag |
34259702 |
T |
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| Q |
304 |
ttatcttggattaatctcttttgcagtggtatcccctcttacaagtatgttctctcagaacaagg |
368 |
Q |
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| T |
34259703 |
ttatcttggattaatctcttttgcagtggtatcccctcttacaagtatgttctctcagaacaagg |
34259767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 155 - 360
Target Start/End: Original strand, 34249488 - 34249693
Alignment:
| Q |
155 |
tatcagaagaagaagcaatgacaattagtacaccactgttggtgagattccctttgttgatggatgatactgacactaccaattattcagcatgcaccat |
254 |
Q |
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| T |
34249488 |
tatcagaagaagaagcaatggcaagtagtagatcacagttggtgagattccctttattgatggatgatactgatactaccaaatactccgcatgcaccat |
34249587 |
T |
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| Q |
255 |
tccttggaggctcccttctgatgatccaaaagtccccactcccactgagttatcttggattaatctcttttgcagtggtatcccctcttacaagtatgtt |
354 |
Q |
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| T |
34249588 |
tccttggaggttcgcttctgatgatccatgtgtcgtcactcccactgagttatcttggattaatctcctacacagtggtatcccctcctacaagtatgat |
34249687 |
T |
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| Q |
355 |
ctctca |
360 |
Q |
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|||||| |
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| T |
34249688 |
ctctca |
34249693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 506 - 670
Target Start/End: Original strand, 34249941 - 34250104
Alignment:
| Q |
506 |
ctgtttttatcctaagcaattcaaattgttgttaattgtaatattgaatcttattttggttcatttctttcaaaaaggtatgctaaaatacttgaaggta |
605 |
Q |
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|||| ||||||||| | ||||||||||||||||||||| ||||||| || || ||||| | |||||||||||||||||||||||||||||||||||| | |
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| T |
34249941 |
ctgtctttatcctaggtaattcaaattgttgttaattgcaatattgcattttcttttg-tgcatttctttcaaaaaggtatgctaaaatacttgaagatt |
34250039 |
T |
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| Q |
606 |
tgaaggaagatcctgcaagtcatggaaatcctcttgatatccttgtatgttctttaacagaactt |
670 |
Q |
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|| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
34250040 |
tggagaaagatcctgcaagtcatggcgatcctcttgatatccttgtatgttctttatcagaactt |
34250104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 423 - 498
Target Start/End: Original strand, 34249771 - 34249846
Alignment:
| Q |
423 |
ggtacaggaagcgtgctgcgagtgatacttctgttcctgatgctgcaaataaagccgaaatttatgctcaaaggtt |
498 |
Q |
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| T |
34249771 |
ggtacaggaaacgtgctgagagtgatacttctgttcctgatgcagcaaataaagctgaaatttttgctcaaaggtt |
34249846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 497
Target Start/End: Complemental strand, 20869703 - 20869633
Alignment:
| Q |
427 |
caggaagcgtgctgcgagtgatacttctgttcctgatgctgcaaataaagccgaaatttatgctcaaaggt |
497 |
Q |
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|||||||||||| | |||||||||||||||||| |||||||| | ||||| |||| | ||||||||||| |
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| T |
20869703 |
caggaagcgtgcagagagtgatacttctgttcccaatgctgcagaaaaagctgaaaaatttgctcaaaggt |
20869633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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