View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_122 (Length: 288)
Name: NF0583_low_122
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_122 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 7181891 - 7181713
Alignment:
| Q |
1 |
agttatttttctcaaaactcatcaagtctcggttctatacgtagctatcaagggaccaattccttgcatgcatgaatggactgattaatattgtacctcc |
100 |
Q |
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| T |
7181891 |
agttatttttctcaaaactcatcaagtctcggttctatacgtagctatcaagggaccaattccttgcatgcatgaatggactgattaatactgtacctcc |
7181792 |
T |
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| Q |
101 |
tctcctctatatatggttcatattattggtctggc------tattgctctatttataaacacaactcttccatctaaca |
173 |
Q |
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| T |
7181791 |
tctcctctatatatggttcatattattggtctggctattaatattgctctatttatacacacaacttttccatctaaca |
7181713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 7193491 - 7193361
Alignment:
| Q |
37 |
atacgtagctatcaagggaccaattccttgcatgcatgaatggactgattaatattgtacctcctctcctctatatatggttcatattattggtct---- |
132 |
Q |
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| T |
7193491 |
atacgtagctatctagggaccatttcc----atgcatgagtggactagttaatatcgtacttcctctcctctatatgtggttcctattattggtctggct |
7193396 |
T |
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| Q |
133 |
ggctattgctctatttataaacacaactcttccat |
167 |
Q |
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| T |
7193395 |
ggctattgctctatttatacatacagctcttccat |
7193361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 7181554 - 7181464
Alignment:
| Q |
169 |
taacaactcaagtacacgcnnnnnnnngtaagggttccttctacctatagcagattannnnnnnaataacaaaatttattgaataccatat |
259 |
Q |
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| T |
7181554 |
taacaactcaagtacacgcttttttttgtaagggttccttctacctatagcagattatttttttaataacaaaatttattgaataccatat |
7181464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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