View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_128 (Length: 287)
Name: NF0583_low_128
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_128 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 54820640 - 54820488
Alignment:
| Q |
72 |
caagagccacatacactctaaacagtgatgggactgttcatgttctcaatgagacttggaataatggtaaaagaacctctatagaaggaagtgcttataa |
171 |
Q |
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| T |
54820640 |
caagagccacatacactctaaacagtgatgggactgttcatgttctcaatgagacttggaataatggtaaaagaacctctatagaaggaagtgcttataa |
54820541 |
T |
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| Q |
172 |
ggctgaccccaaaagtgatgaagctaagctcaaggtcaaattctctgctcctc |
224 |
Q |
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| T |
54820540 |
ggctgaccccaaaagtgatgaagctaagctcaaggtcaaattctatgttcctc |
54820488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 54849409 - 54849274
Alignment:
| Q |
74 |
agagccacatacactctaaacagtgatgggactgttcatgttctcaatgagacttggaataatggtaaaagaacctctatagaaggaagtgcttataagg |
173 |
Q |
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||||||||||||| ||| |||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| |||||| | || | ||||||||||| |
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| T |
54849409 |
agagccacatacattctcaacagtaatggcactgtggatgttctaaatgagacttggaataatggtaaaagagagtctatacatggcattgcttataagg |
54849310 |
T |
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| Q |
174 |
ctgaccccaaaagtgatgaagctaagctcaaggtca |
209 |
Q |
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| T |
54849309 |
ctgaccctaatagtgatgaagccaaactcaaggtca |
54849274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 54817708 - 54817581
Alignment:
| Q |
97 |
tgatgggactgttcatgttctcaatgagacttggaataatggtaaaagaacctctatagaaggaagtgcttataaggctgaccccaaaagtgatgaagct |
196 |
Q |
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|||||| ||||| ||||||| ||||||||||||| | ||| ||||||| | || ||||| | ||||||||| ||||| || || |||||||| ||| |
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| T |
54817708 |
tgatggaactgtgaatgttctgaatgagacttggagtggtggaaaaagaagttacattgaaggtactgcttataaagctgatcctaatagtgatgaggct |
54817609 |
T |
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| Q |
197 |
aagctcaaggtcaaattctctgctcctc |
224 |
Q |
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|| || ||||||||||||| || ||||| |
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| T |
54817608 |
aaacttaaggtcaaattctatgttcctc |
54817581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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