View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_13 (Length: 699)
Name: NF0583_low_13
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 10 - 671
Target Start/End: Original strand, 5050670 - 5051326
Alignment:
| Q |
10 |
tcataggctttcattttataaccactttcccacacagctttagctattctccccgatgtgggacttataccagtgctaatatgctac---ccacacaaat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5050670 |
tcataggctttcattttataaccactttcccacacagcttcagctattctccccgatgtgggacttataccagtgctaatatgctactacccacacaaat |
5050769 |
T |
|
| Q |
107 |
tttgttaacaattctacataacgatcttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaacca |
206 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5050770 |
tttgttaacaattctacataaggatgttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaacca |
5050869 |
T |
|
| Q |
207 |
tgaatccaatgaccaacacaatcaatcttatcaatcttcaagcctccaacaaatattccatgagcactttgcaagaacacaacatcaccttcacataact |
306 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
5050870 |
tgaatccaatgaccaacacaatcaatctt---------caagcctccaacaaatattccatgagcacgttgcacgaacacaacatcaccttcacataact |
5050960 |
T |
|
| Q |
307 |
tcaaagagtacaaaaaca-gccattcaaattttcccacaactcacaccaacatgaccattaaaaagatgttatttgcatgtctatcacttggaaaattaa |
405 |
Q |
| |
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|| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5050961 |
tcgaatagtataaaaacaagccattcaaattttcccacaactcacaccaacatgaccattaaaaagatgttatttgcatatctatcacttggaaaattaa |
5051060 |
T |
|
| Q |
406 |
tgatgtctcaattttcatcattgttgaaagggtcatacatgagaacactagtcatccctataaaatacaaaatcccttcatgtgcaactccaggctgcga |
505 |
Q |
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| T |
5051061 |
tgatgtctcaattttcatcattgttgaaagggtcatacatgagaacactagtcatccctataaaatacaaaatcccttcatgtgcaactccaggcagcga |
5051160 |
T |
|
| Q |
506 |
aatggcagactgtgtaaagctaaaactatttgggaaggacacttttttccccctccattgtcctgattctgttgagaaaacaaccatttcaagaatgtca |
605 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
5051161 |
aatggcagactgtgtaaaactaaaaccatttgggaaggacacttttttccccctccattgtcctgtttctgttgagataacaaccatttcaagaatgtca |
5051260 |
T |
|
| Q |
606 |
ttaattgttccttcaaaacaaggaaaaggaactaccatgaacctgtgatggttgaaagatactttt |
671 |
Q |
| |
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| T |
5051261 |
ttaattgttccttcaaaacaaggaaaacgaactaccatgaacctgtgatggttgaaagatactttt |
5051326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 292 - 597
Target Start/End: Complemental strand, 51274498 - 51274191
Alignment:
| Q |
292 |
caccttcacataacttcaaagagtacaaaaaca-gccattcaaattttcccacaactcacaccaacatgaccattaaaaaga-tgttatttgcatgtcta |
389 |
Q |
| |
|
|||||||||| | | || ||||||||||||||| ||||||| || ||| |||| || ||||||||||||||||||||| ||| | | |||||| | | |
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| T |
51274498 |
caccttcacaaagcatcgaagagtacaaaaacaagccattcgaaattttccacgacacacaccaacatgaccattaaatagaatatcatttgctgatgca |
51274399 |
T |
|
| Q |
390 |
tcacttggaaaattaatgatgtctcaattttcatcattgttgaaagggtcatacatgagaacactagtcatccctataaaatacaaaatcccttcatgtg |
489 |
Q |
| |
|
||||| |||||||||||||| || || |||||||||||||||||||||||||||| |||| |||||| | || || ||||||||||| |||||||| |
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| T |
51274398 |
tcactaggaaaattaatgatttcacatttttcatcattgttgaaagggtcatacactagaatactagtttttcccatgaaatacaaaatgttttcatgtg |
51274299 |
T |
|
| Q |
490 |
caactccaggctgcgaaatggcagactgtgtaaagctaaaactatttgggaaggacacttttttccccctccattgtcctgattctgttgagaaaacaac |
589 |
Q |
| |
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|||| | | || ||||||||| |||||||||| |||| ||||||| ||||||| ||||| ||||||||||| | ||| | ||||||||||| |
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| T |
51274298 |
caacaacgtacggcaaaatggcaggtcgtgtaaagcttaaaccatttgggcaggacacattttttttgctccattgtccagtttccgaagagaaaacaac |
51274199 |
T |
|
| Q |
590 |
catttcaa |
597 |
Q |
| |
|
|||||||| |
|
|
| T |
51274198 |
catttcaa |
51274191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 596 - 670
Target Start/End: Complemental strand, 51274168 - 51274094
Alignment:
| Q |
596 |
aagaatgtcattaattgttccttcaaaacaaggaaaaggaactaccatgaacctgtgatggttgaaagatacttt |
670 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
51274168 |
aagaatctcactaattgttccttcaaaacaaggaaaacgaactaccctgaacctgtgatggttgaaagatacttt |
51274094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 133 - 295
Target Start/End: Complemental strand, 51274824 - 51274658
Alignment:
| Q |
133 |
ttatgctatgttatggatgga-ttggaataggccacaatggaatatcaaa--aaatcatttacaacaattgaaacc-atgaatccaatgaccaacacaat |
228 |
Q |
| |
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|||||||||| |||||||||| ||||| | ||||||||||||| ||||| ||||||||| |||| ||||||||| |||||||| || |||||||| | |
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| T |
51274824 |
ttatgctatggtatggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccct |
51274725 |
T |
|
| Q |
229 |
caatcttatcaatcttcaagcctccaacaaatattccatgagcactttgcaagaacacaacatcacc |
295 |
Q |
| |
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|||||| | | |||||||| ||||||||| |||| |||||||| ||| ||||||||||||||||| |
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| T |
51274724 |
caatctcgttagtcttcaagtttccaacaaaaattctatgagcacgttgtaagaacacaacatcacc |
51274658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 38783390 - 38783334
Alignment:
| Q |
388 |
tatcacttggaaaattaatgatgtctcaattttcatcattgttgaaagggtcataca |
444 |
Q |
| |
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||||||||||||||||||||| ||| || |||||| ||||||||||||||||||||| |
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| T |
38783390 |
tatcacttggaaaattaatgaggtcacatttttcaacattgttgaaagggtcataca |
38783334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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