View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_136 (Length: 280)
Name: NF0583_low_136
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_136 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 46988127 - 46987933
Alignment:
| Q |
40 |
cagagaaattgcttttgtgaaataaatggcacgaattgctaatcttcccgagtatctgttcaaaggatccatgtcccaggcatattttgtgactgaatat |
139 |
Q |
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| T |
46988127 |
cagagaaattgcttttgtaaaataaatggcacgaattgctaatcttcccgagtatctgttcaaaggatccatgtcccaggcatattttgtgactgaatat |
46988028 |
T |
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| Q |
140 |
gtgaagagcacaagtttgaataaatagaaaataacttttcctgttgcaaatgaacagaggtatataattcgatcaagcacgatcaagaaaaagac |
234 |
Q |
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| T |
46988027 |
gtgaagagcacaaggttgaataaatagaaaataacttttcctgttgcaaatgaacagaggtatataattcgatcaagcacgatcaagaaaaagac |
46987933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 40175727 - 40175829
Alignment:
| Q |
131 |
actgaatatgtgaagagcacaagtttgaataaatagaaaataacttttcctgttgcaaatgaacagaggtatataattcgatcaagcacgatcaagaaaa |
230 |
Q |
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||||||||||||||||| | | ||||| | |||||| || ||||| || || |||||||| ||||||||||| || |||||||| || |||||||| | |
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| T |
40175727 |
actgaatatgtgaagagaatgaagttgaaaatatagaatatcactttccccgtggcaaatgagcagaggtatattatacgatcaagtacaatcaagaaga |
40175826 |
T |
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| Q |
231 |
aga |
233 |
Q |
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||| |
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| T |
40175827 |
aga |
40175829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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