View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_145 (Length: 274)

Name: NF0583_low_145
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_145
NF0583_low_145
[»] chr6 (11 HSPs)
chr6 (1-265)||(33383940-33384204)
chr6 (1-202)||(33269456-33269653)
chr6 (5-198)||(33414487-33414676)
chr6 (1-196)||(33394967-33395160)
chr6 (79-209)||(33258187-33258314)
chr6 (1-141)||(33292936-33293072)
chr6 (113-217)||(31565013-31565117)
chr6 (145-217)||(33278977-33279049)
chr6 (145-217)||(33280360-33280432)
chr6 (129-197)||(33406911-33406979)
chr6 (229-265)||(33414802-33414838)
[»] scaffold0428 (3 HSPs)
scaffold0428 (79-209)||(2308-2435)
scaffold0428 (145-217)||(15204-15276)
scaffold0428 (145-217)||(13821-13893)
[»] chr2 (2 HSPs)
chr2 (102-217)||(17447854-17447969)
chr2 (21-102)||(17445619-17445700)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 33383940 - 33384204
Alignment:
Q  1 ttcaaagcaaggtcttctctctgcaactcaagttctttttccttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33383940 ttcaaagcaaggtcttctctctgcaactcaagttctttttccttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaag 33384039  T
Q  101 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacaccga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  201 tgtgtgaatagtgaatgagagacccttttttcagcaagaactttcttacagtccatcatctctgc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33384140 tgtgtgaatagtgaatgagagacccttttttcagcaagaactttcttacagtccatcatctctgc 33384204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 33269456 - 33269653
Alignment:
Q  1 ttcaaagcaaggtcttctctctgcaactcaagttctttttccttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaag 100  Q
    |||||||||||||||||||| |||| |||||| |||||||||||||||||||| |||||  |||||||||||| ||||||||||||||||| ||||||||    
T  33269456 ttcaaagcaaggtcttctctttgcatctcaagatctttttccttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaag 33269555  T
Q  101 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacaccga 200  Q
    ||    || |||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  33269556 ca----gcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacaccga 33269651  T

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Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 33414487 - 33414676
Alignment:
Q  5 aagcaaggtcttctctctgcaactcaagttctttttccttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagcaag 104  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||||||||||| ||||||||||      
T  33414487 aagcaaggtcttctctttgcatctcaagttctttttccttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagca-- 33414584  T
Q  105 cagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacacc 198  Q
      || |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  33414585 --gcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacacc 33414676  T

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Target: chr6; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 33394967 - 33395160
Alignment:
Q  1 ttcaaagcaaggtcttctctctgcaactcaagttctttttccttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaag 100  Q
    |||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  33394967 ttcaaagcaaggtcttctctctacatctcgagttctttttccttcgtcgcaatggtttcaagaataccttcaatagatacaaactgaacctgtggacaag 33395066  T
Q  101 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttc--tgccgacaaagtcagtttgacagttcacttcaattagaaca 196  Q
    ||    |||  |||||||| ||||||| ||||||||||||| | | | |||||||  |||| |||||||| |||| ||||||||||||||| ||||||    
T  33395067 ca----gcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaaca 33395160  T

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Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 33258187 - 33258314
Alignment:
Q  79 acaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcagtttgacag 178  Q
    ||||||||||||| |||||   |||  ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| || |    
T  33258187 acaaactgaacctgtggac---caaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccg 33258283  T
Q  179 ttcacttcaattagaacaccgatgtgtgaat 209  Q
    |||||||||||||||||||| ||||||||||    
T  33258284 ttcacttcaattagaacaccaatgtgtgaat 33258314  T

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Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 33292936 - 33293072
Alignment:
Q  1 ttcaaagcaaggtcttctctctgcaactcaagttctttttccttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaag 100  Q
    |||||||||||||||||||| |||| || |||||||||||||||||  ||||||||||  ||||||||||||| |||||||||||||||  ||| | ||     
T  33292936 ttcaaagcaaggtcttctctttgcatcttaagttctttttccttcgcgacaatggttttgagaatatcttcaatagatacaaactgaac--ctgaagaa- 33293032  T
Q  101 caagcagccacttgcattgcaagatcatcaaccaactcctt 141  Q
      |||||| ||||||||||||||||||| ||||||||||||    
T  33293033 -tagcagcaacttgcattgcaagatcattaaccaactcctt 33293072  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 31565117 - 31565013
Alignment:
Q  113 tgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacaccgatgtgtgaatagt 212  Q
    |||||||||||||||| |||||||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  ||| |||||| ||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  213 gaatg 217  Q
    |||||    
T  31565017 gaatg 31565013  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 33278977 - 33279049
Alignment:
Q  145 tttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 217  Q
    ||||| |||||||||  ||||||| |||| |||||| |||||||||||||||| ||||||||||| |||||||    
T  33278977 tttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg 33279049  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 33280360 - 33280432
Alignment:
Q  145 tttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 217  Q
    ||||||||||||||| | ||||||||| | |||||| ||||||| ||||| ||| ||| |||||| |||||||    
T  33280360 tttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg 33280432  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 33406911 - 33406979
Alignment:
Q  129 caaccaactccttaattttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacac 197  Q
    ||||||||||||  | || |||||||||||| |||||||| |||| | |||||||| |||||| |||||    
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacac 33406979  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 33414802 - 33414838
Alignment:
Q  229 tttcagcaagaactttcttacagtccatcatctctgc 265  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  33414802 tttcagcaagagctttcttacagtccatcatccctgc 33414838  T

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Target: scaffold0428 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 2308 - 2435
Alignment:
Q  79 acaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcagtttgacag 178  Q
    ||||||||||||| |||||   |||  ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| || |    
T  2308 acaaactgaacctgtggac---caaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccg 2404  T
Q  179 ttcacttcaattagaacaccgatgtgtgaat 209  Q
    |||||||||||||||||||| ||||||||||    
T  2405 ttcacttcaattagaacaccaatgtgtgaat 2435  T

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Target: scaffold0428; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 15276 - 15204
Alignment:
Q  145 tttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 217  Q
    ||||| |||||||||  ||||||| |||| |||||| |||||||||||||||| ||||||||||| |||||||    
T  15276 tttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg 15204  T

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Target: scaffold0428; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 13893 - 13821
Alignment:
Q  145 tttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 217  Q
    ||||||||||||||| | ||||||||| | |||||| ||||||| ||||| ||| ||| |||||| |||||||    
T  13893 tttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg 13821  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 17447969 - 17447854
Alignment:
Q  102 aagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcagtttgacagttcacttcaattagaacaccgat 201  Q
    |||||||||||||||||||||||||||||||||||||||| | | |||| |||||||| |||||||| |||| | |||||| |||||||||| |||||||    
T  17447969 aagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgat 17447870  T
Q  202 gtgtgaatagtgaatg 217  Q
    | ||| || |||||||    
T  17447869 gcgtgcatcgtgaatg 17447854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 17445700 - 17445619
Alignment:
Q  21 ctgcaactcaagttctttttccttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagca 102  Q
    ||||| ||||||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||||| | ||||||||||    
T  17445700 ctgcatctcaagttctttttccttcttcacaatggtttcgggaatatcttcaatagatacaaactgaacatgtggacaagca 17445619  T

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