View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_147 (Length: 271)
Name: NF0583_low_147
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_147 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 12944838 - 12945057
Alignment:
| Q |
20 |
aaacattgtttataagggaaaaagaaaaacacatgctac---aaagtgtcacatagaggattgaggagcaacagaaacagcagagagtataaatttctta |
116 |
Q |
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| T |
12944838 |
aaacattgtttataagggaaaaagaaaaacacatgctaccacaaagtgtcacatagaggattgaggagcaacagaaacagcagagagtataaatttctta |
12944937 |
T |
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| Q |
117 |
acattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgcaccccgcgtgctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
12944938 |
acattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgcaccccacgtgccg |
12945037 |
T |
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| Q |
217 |
caaaaatcttcgccagctcc |
236 |
Q |
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| T |
12945038 |
ccaaaatcttcgccagctcc |
12945057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 12937254 - 12937385
Alignment:
| Q |
105 |
ataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgca |
204 |
Q |
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|||||||||||||| | ||||| || |||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
12937254 |
ataaatttcttaacgtaatcaagtaatgcttgtgccttagcaggatcaaagagttccacagcatgaaacccatcctcacaaaaaacagactccacgtgca |
12937353 |
T |
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| Q |
205 |
ccccgcgtgctgcaaaaatcttcgccagctcc |
236 |
Q |
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|||| ||||| | ||||||||| | |||||| |
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| T |
12937354 |
ccccacgtgcctccaaaatcttcactagctcc |
12937385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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