View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_150 (Length: 268)
Name: NF0583_low_150
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_150 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 30904031 - 30904154
Alignment:
| Q |
30 |
agagaaagatgttgaaacaagattgtttgtttatatgtgaatctaaattaaataaataaaatgacagacatgcacaaaattgaaaagcaagtgccaaata |
129 |
Q |
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| T |
30904031 |
agagaaagatgttgaaacaagattgt----ttatatgtgaatctaaattaaataaataaaatcacagacatgcacaaaattgaaaagcaagtgccaaata |
30904126 |
T |
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| Q |
130 |
atcacttcatttaatattgtgaatttta |
157 |
Q |
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| T |
30904127 |
atcacttcatttaatattgtgaatttta |
30904154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 30897077 - 30897242
Alignment:
| Q |
56 |
ttgtttatatgtgaatctaaattaaataaa-taaaatgacagacatgcacaaaattgaaaagcaagtgccaaa-----taatcacttcatttaatattgt |
149 |
Q |
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| T |
30897077 |
ttgtttatacgtgaatctaaagtaaataaaatgaaat---agacatgcacaaaattgaaaaacaatatccaaaataaataatcacttcatttaatatt-t |
30897172 |
T |
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| Q |
150 |
gaattttagcca-ttgatttctcttatactggttt-ttaaccaattttattaagaaaaactaattttgaa |
217 |
Q |
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| T |
30897173 |
gaattttagcaatttgttttctcttattttgatttcttaaacaattttgttacgaaaagctaattttgaa |
30897242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 30904148 - 30904181
Alignment:
| Q |
190 |
aattttattaagaaaaactaattttgaattttgt |
223 |
Q |
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| T |
30904148 |
aattttattaagaaaaactaattttgaattttgt |
30904181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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