View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_153 (Length: 267)
Name: NF0583_low_153
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_153 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 56278640 - 56278387
Alignment:
| Q |
1 |
aactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttc-------------cacagctatggaatggaaggaaggaa----cct |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
56278640 |
aactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttcagctcaaaatttccacagctatggaatggaaggaaggaaggaacct |
56278541 |
T |
|
| Q |
84 |
tccaggcaacttagtttctacatatatataaactaaaatggtcccaaaacattcggtgataatccgataataaaagctaatatataggagttagttctat |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278540 |
tccaggcaacttagtttctacatatatataaactaaaata-tcccaaaacattcggtgataatccgataataaaagctaatatataggagttagttctat |
56278442 |
T |
|
| Q |
184 |
actaaggatcttttagggaaaccaaagtcaaggaatgaggaaatactgtaggatg |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278441 |
actaaggatcttttagggaaaccaaagtcaaggaatgaggaaatactgtaggatg |
56278387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 15979252 - 15979284
Alignment:
| Q |
22 |
atactaaaatggctagtaagaatatataacttc |
54 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
15979252 |
atactaaaatggctagtaagaatatataacttc |
15979284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 19146607 - 19146637
Alignment:
| Q |
24 |
actaaaatggctagtaagaatatataacttc |
54 |
Q |
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| T |
19146607 |
actaaaatggctagtaagaatatataacttc |
19146637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46571272 - 46571223
Alignment:
| Q |
1 |
aactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttc |
54 |
Q |
| |
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|||| |||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
46571272 |
aactgaaatttgtccac----atactaaaatggttagtaagaatatataacttc |
46571223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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