View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_157 (Length: 264)

Name: NF0583_low_157
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_157
NF0583_low_157
[»] chr2 (9 HSPs)
chr2 (143-254)||(25569894-25570005)
chr2 (16-114)||(25569766-25569865)
chr2 (34-114)||(7983715-7983796)
chr2 (16-105)||(15850688-15850778)
chr2 (37-104)||(7982330-7982398)
chr2 (34-104)||(3532209-3532280)
chr2 (35-104)||(7490225-7490295)
chr2 (10-95)||(15850103-15850189)
chr2 (37-104)||(3533656-3533724)
[»] chr6 (13 HSPs)
chr6 (143-254)||(13800155-13800266)
chr6 (147-251)||(27438919-27439024)
chr6 (16-111)||(13800028-13800124)
chr6 (16-104)||(14328804-14328892)
chr6 (16-104)||(14421814-14421902)
chr6 (10-105)||(14326144-14326240)
chr6 (10-105)||(14419154-14419250)
chr6 (69-114)||(16269637-16269682)
chr6 (34-94)||(27107196-27107257)
chr6 (34-94)||(27149002-27149063)
chr6 (222-254)||(9928481-9928513)
chr6 (36-83)||(16269819-16269867)
chr6 (58-114)||(27440195-27440251)
[»] chr1 (23 HSPs)
chr1 (143-255)||(14171147-14171259)
chr1 (16-114)||(24516331-24516430)
chr1 (34-114)||(40110672-40110753)
chr1 (34-114)||(40109376-40109457)
chr1 (11-114)||(24517634-24517738)
chr1 (16-105)||(51726873-51726963)
chr1 (16-104)||(14169616-14169705)
chr1 (10-114)||(26801934-26802039)
chr1 (34-102)||(26803248-26803317)
chr1 (16-114)||(8092595-8092694)
chr1 (37-99)||(14765129-14765192)
chr1 (16-105)||(36511360-36511450)
chr1 (16-101)||(38280847-38280933)
chr1 (16-104)||(40811192-40811281)
chr1 (34-105)||(19466234-19466306)
chr1 (143-251)||(26803099-26803207)
chr1 (143-251)||(40110535-40110643)
chr1 (67-114)||(50679841-50679888)
chr1 (34-114)||(36509826-36509907)
chr1 (34-105)||(14764244-14764316)
chr1 (16-114)||(22167776-22167875)
chr1 (169-251)||(6048071-6048153)
chr1 (10-92)||(40812653-40812734)
[»] chr5 (16 HSPs)
chr5 (143-254)||(38473434-38473546)
chr5 (34-114)||(8188220-8188301)
chr5 (13-114)||(22819569-22819671)
chr5 (34-105)||(12830967-12831039)
chr5 (36-105)||(12862947-12863017)
chr5 (10-94)||(11907201-11907286)
chr5 (69-114)||(30253637-30253682)
chr5 (34-104)||(15857648-15857719)
chr5 (67-114)||(18695667-18695714)
chr5 (83-114)||(21389163-21389194)
chr5 (16-114)||(42510111-42510210)
chr5 (68-114)||(223276-223322)
chr5 (12-105)||(8187160-8187252)
chr5 (10-55)||(24761801-24761845)
chr5 (34-114)||(32735499-32735580)
chr5 (158-226)||(8188108-8188176)
[»] chr7 (11 HSPs)
chr7 (143-245)||(27897817-27897920)
chr7 (16-114)||(132019-132118)
chr7 (16-104)||(10257416-10257505)
chr7 (34-105)||(35315251-35315323)
chr7 (34-105)||(4167466-4167538)
chr7 (34-104)||(4168879-4168950)
chr7 (68-114)||(33459563-33459609)
chr7 (17-105)||(35484339-35484428)
chr7 (68-112)||(17288242-17288286)
chr7 (160-251)||(28326275-28326364)
chr7 (11-94)||(37781949-37782033)
[»] scaffold0003 (2 HSPs)
scaffold0003 (147-251)||(48338-48443)
scaffold0003 (58-114)||(47110-47166)
[»] chr8 (12 HSPs)
chr8 (11-114)||(22621154-22621258)
chr8 (34-114)||(41522708-41522789)
chr8 (16-114)||(22619892-22619991)
chr8 (34-104)||(34616144-34616215)
chr8 (16-97)||(8095344-8095425)
chr8 (16-114)||(34617215-34617314)
chr8 (68-114)||(24068380-24068426)
chr8 (165-226)||(31844518-31844579)
chr8 (16-94)||(4534031-4534110)
chr8 (34-104)||(41521332-41521403)
chr8 (157-251)||(38123-38219)
chr8 (143-251)||(22621017-22621125)
[»] chr4 (25 HSPs)
chr4 (16-114)||(41348236-41348335)
chr4 (10-104)||(50531786-50531881)
chr4 (16-104)||(38417550-38417639)
chr4 (34-114)||(41349545-41349626)
chr4 (34-105)||(50530518-50530590)
chr4 (16-114)||(34439680-34439779)
chr4 (36-114)||(38419037-38419116)
chr4 (68-114)||(46796046-46796092)
chr4 (10-94)||(11482787-11482872)
chr4 (165-226)||(26631124-26631185)
chr4 (34-104)||(6139012-6139083)
chr4 (36-114)||(34438423-34438502)
chr4 (157-251)||(38554068-38554163)
chr4 (157-251)||(46795908-46796003)
chr4 (16-105)||(17319039-17319129)
chr4 (68-114)||(38553979-38554025)
chr4 (16-105)||(43419404-43419494)
chr4 (37-114)||(44159103-44159181)
chr4 (68-114)||(47667228-47667274)
chr4 (169-251)||(49895195-49895277)
chr4 (10-94)||(43708827-43708912)
chr4 (34-105)||(26393156-26393228)
chr4 (58-114)||(27408803-27408859)
chr4 (66-110)||(40146647-40146691)
chr4 (143-251)||(41348364-41348472)
[»] chr3 (18 HSPs)
chr3 (34-114)||(21127940-21128021)
chr3 (35-105)||(43346476-43346547)
chr3 (34-114)||(48867450-48867531)
chr3 (6-94)||(50150708-50150797)
chr3 (36-114)||(48866158-48866237)
chr3 (16-105)||(43345316-43345406)
chr3 (13-97)||(12062421-12062506)
chr3 (16-95)||(7921682-7921762)
chr3 (16-105)||(23559816-23559906)
chr3 (16-105)||(23561154-23561244)
chr3 (68-114)||(47766971-47767017)
chr3 (68-114)||(48252983-48253029)
chr3 (16-104)||(35173144-35173233)
chr3 (16-91)||(12060656-12060731)
chr3 (16-93)||(1031813-1031891)
chr3 (165-251)||(10301698-10301784)
chr3 (68-114)||(26798926-26798972)
chr3 (34-94)||(50765814-50765875)
[»] scaffold0098 (1 HSPs)
scaffold0098 (34-105)||(42375-42447)
[»] scaffold0166 (1 HSPs)
scaffold0166 (10-55)||(4298-4342)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 25569894 - 25570005
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatct 242  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25569894 aatgtatattattcttgatatcattttaaccacttgattgcatgtctatagtatttaagagtgaaccatcagcacttgatttttatagttttcttcatct 25569993  T
Q  243 tctctcttcatc 254  Q
    ||||||||||||    
T  25569994 tctctcttcatc 25570005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 25569766 - 25569865
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||| | || ||||||||||||||||| |  ||||| ||  |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  25569766 cttaatacatccccaggtcctttaacttattttatttttttagtttggtcccttaactattacttgtgtcaatttggtcacataagtcttcctccgttta 25569865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 7983796 - 7983715
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||||||| ||||||||||  |||||||    
T  7983796 cccttaacttattttattttctcagtttaattccttaactattaagtgtgtcaatttggtcctataagtcttctaccgttta 7983715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 15850778 - 15850688
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttc-tcgtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||  | ||||||||||||||||||||| | ||||| || ||||||||| || ||| ||||||||||| ||||| |||||    
T  15850778 cttaatacatcccccggtcccttaacttattttattttcttagtttgctcctttaactataaaatgtttcaatttggtctcataactcttc 15850688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 7982330 - 7982398
Alignment:
Q  37 ttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    |||||||||||||||||||| ||||||||  |||||||| || ||||||||||||||| || |||||||    
T  7982330 ttaacttattttattttctcagtttgatcccttaactataaagtgtgtcaatttggtctcacaagtctt 7982398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 3532209 - 3532280
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||| |||||||||||| || ||||||||  |||| |||||| ||||||||||||||| ||||||||||    
T  3532209 cccttaatttattttattttttcagtttgatcccttaattattaagtgtgtcaatttggtcacataagtctt 3532280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 7490295 - 7490225
Alignment:
Q  35 ccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    |||||||||||||||||||||| ||||| || ||||| ||| || ||| ||||||||||||||||| ||||    
T  7490295 ccttaacttattttattttctcagtttggtcctttaattataaaatgtctcaatttggtcccataaatctt 7490225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 15850103 - 15850189
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtccc 95  Q
    ||||| |||||| |||||||  | |||||||||||||||||||| || ||||| ||  |||||||| || ||| |||||||||||||    
T  15850103 ttttggcttaatgcatcccccggtcccttaacttattttattttttcagtttggtctcttaactataaagtgtctcaatttggtccc 15850189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 3533724 - 3533656
Alignment:
Q  37 ttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||||||||||||| |  ||||| ||  ||||||||||| ||||||||||||||| ||||| ||||    
T  3533724 ttaacttattttatttttttagtttggtcccttaactattaagtgtgtcaatttggtctcataaatctt 3533656  T

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Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 13800155 - 13800266
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatct 242  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  13800155 aatgtatattattcttgatatcattttaaccacttgattgcaggtctatagtatttaagagtgaaccatcaacacttgatttttatagtttacttcatct 13800254  T
Q  243 tctctcttcatc 254  Q
    ||||||||||||    
T  13800255 tctctcttcatc 13800266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 27438919 - 27439024
Alignment:
Q  147 tatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttga-tttttatagttttcttcatcttct 245  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||  ||||||||||||||||    
T  27438919 tatattattcttgatataattttaaccacttgattgcaggtctatagtatctaagagtgaaccatcaacacttgattttttacggttttcttcatcttct 27439018  T
Q  246 ctcttc 251  Q
    ||||||    
T  27439019 ctcttc 27439024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 13800028 - 13800124
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgt 111  Q
    ||||||||||||| | | ||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||| |||| ||||||    
T  13800028 cttaatacatccctaggtcccttaacttattttattttctcagtttggtcccttaactattaattgtgtcaatttggtcccataaatctttctccgt 13800124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 14328892 - 14328804
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||  ||||||||||| ||| | ||||||||| ||||| ||||    
T  14328892 cttaatacatcccca-gtcccttaacttattttattttctcagtttgatcccttaactattaagtgtcttaatttggtctcataattctt 14328804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 14421902 - 14421814
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||  ||||||||||| ||| | ||||||||| ||||| ||||    
T  14421902 cttaatacatcccca-gtcccttaacttattttattttctcagtttgatcccttaactattaagtgtcttaatttggtctcataattctt 14421814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 14326144 - 14326240
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||||||||    ||||||||||||||||||||||| ||||||||  |||| |||| |  || ||||||||||||||||| |||||    
T  14326144 ttttgacttaatacatcccccgatcccttaacttattttattttctcagtttgatcccttaattattgagcgtctcaatttggtcccataattcttc 14326240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 14419154 - 14419250
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||||||||    ||||||||||||||||||||||| ||||||||  |||| |||| |  || ||||||||||||||||| |||||    
T  14419154 ttttgacttaatacatcccccgatcccttaacttattttattttctcagtttgatcccttaattattgagcgtctcaatttggtcccataattcttc 14419250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 16269682 - 16269637
Alignment:
Q  69 aactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||    
T  16269682 aactattaagtgtgtcaatttggtctcataagtcttcctctgttta 16269637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 27107196 - 27107257
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||| | | ||||||||||||    
T  27107196 cccttaacttattttaatttctcagtttgatcaattaactattaaatatttcaatttggtcc 27107257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 27149002 - 27149063
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||| | | ||||||||||||    
T  27149002 cccttaacttattttaatttctcagtttgatcaattaactattaaatatttcaatttggtcc 27149063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 9928513 - 9928481
Alignment:
Q  222 tttttatagttttcttcatcttctctcttcatc 254  Q
    |||||||||||||||||||||||||||||||||    
T  9928513 tttttatagttttcttcatcttctctcttcatc 9928481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 16269867 - 16269819
Alignment:
Q  36 cttaacttattttattttctc-gtttgatcatttaactattaattgtgt 83  Q
    ||||||||||||||||||||| ||||||||  ||||||||||| |||||    
T  16269867 cttaacttattttattttctcagtttgatctcttaactattaagtgtgt 16269819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 27440251 - 27440195
Alignment:
Q  58 tttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||  |||||| | |||||| ||||||||||||||||| ||||| ||||||||    
T  27440251 tttgatcccttaactttaaattgtctcaatttggtcccataaatcttcttccgttta 27440195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 14171259 - 14171147
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatct 242  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||| | ||||||||||||||    
T  14171259 aatgtatattattcttgatattattttaaccacttgattgcaggtctataatatataagagtgaaccatccacacttgattttaacagttttcttcatct 14171160  T
Q  243 tctctcttcatct 255  Q
    |||||||||||||    
T  14171159 tctctcttcatct 14171147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 24516331 - 24516430
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||  | ||||||||||||||||||||||  ||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  24516331 cttaatacatcccccggtcccttaacttattttattttctgagtttgatcccttaactattaagtgtgtcaatttggtctcataagtcttcctccgttta 24516430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 40110753 - 40110672
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  40110753 cccttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttggtcccataagtcttcctctgttta 40110672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 40109376 - 40109457
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||||| ||||||||  |||||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  40109376 cccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataaatcttcatccgttta 40109457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 24517738 - 24517634
Alignment:
Q  11 tttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctcc 109  Q
    ||||||||||||||||||   | ||||||||||||||||||||||| |||| |||  |||| | |||| ||||||||||||||||||||| ||||||||     
T  24517738 tttgacttaatacatcccacggtcccttaacttattttattttctcagtttaatcccttaatttttaagtgtgtcaatttggtcccataaatcttcctct 24517639  T
Q  110 gttta 114  Q
    |||||    
T  24517638 gttta 24517634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 51726963 - 51726873
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||  | ||||||||||||||||||||||| ||||| |||||||||||| || ||| |||||||||| |||||| |||||    
T  51726963 cttaatacatcccccggtcccttaacttattttattttctcagtttggtcatttaactataaagtgtctcaatttggttccataaatcttc 51726873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 14169616 - 14169705
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    |||||||||| |||  | ||||||||||||||||||||||| ||||| || ||||||||| || ||| ||||||||||||||||| ||||    
T  14169616 cttaatacattccccagtcccttaacttattttattttctcagtttggtcctttaactataaaatgtctcaatttggtcccataaatctt 14169705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 26801934 - 26802039
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctc 108  Q
    ||||| |||||||||||| |  | | |||| ||||||||||||| || ||||||||  ||||||||||| ||||| ||||| ||| ||||||||||||||    
T  26801934 ttttggcttaatacatcctccggtctcttagcttattttattttttcagtttgatcccttaactattaagtgtgtaaatttagtctcataagtcttcctc 26802033  T
Q  109 cgttta 114  Q
    ||||||    
T  26802034 cgttta 26802039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 26803317 - 26803248
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtc 102  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||| |||||||||||| | |||||||||    
T  26803317 cccttaacttattttattttctcagtttgatctcttaactattaagtgtgtcaatttgattccataagtc 26803248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 8092595 - 8092694
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||| ||  | ||||||||||||||||||||||| || |  ||  ||||||||||| ||| |||||||||| |||||| ||||||||||||||    
T  8092595 cttaatacatctcccggtcccttaacttattttattttctcagtgtagtcccttaactattaagtgtatcaatttggttccataaatcttcctccgttta 8092694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 14765192 - 14765129
Alignment:
Q  37 ttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataa 99  Q
    |||||||||||||||||||| ||||| ||  ||||||||||| |||||||||||||||||||||    
T  14765192 ttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcccataa 14765129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 36511450 - 36511360
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||  | ||||||| ||||||||||||||| ||||| ||  |||||||| || ||| ||||||||||||||||| |||||    
T  36511450 cttaatacatcccccagtcccttaatttattttattttctcagtttggtcccttaactataaagtgtctcaatttggtcccataaatcttc 36511360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 38280847 - 38280933
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagt 101  Q
    |||||||||||| |  | || |||| ||||||||||||||| ||||| ||  ||||||||||||||||||||||||||| |||||||    
T  38280847 cttaatacatcctccggtcctttaagttattttattttctcagtttggtccattaactattaattgtgtcaatttggtcacataagt 38280933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 40811192 - 40811281
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    |||||||||||||   | ||||||||||||| ||||||||| ||||||||  ||||||||||| ||| |||||||| |||||||| ||||    
T  40811192 cttaatacatccctcggtcccttaacttattctattttctcagtttgatcccttaactattaaatgtctcaatttgatcccataactctt 40811281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 19466306 - 19466234
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||| ||||||||||||||||| ||||| || ||||||||| || ||| ||||||||||||||||| |||||    
T  19466306 ccctttacttattttattttctcagtttggtcctttaactataaagtgtctcaatttggtcccataaatcttc 19466234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 26803207 - 26803099
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatct 242  Q
    ||||||||  ||| ||||||| |||||||||| ||||||||| ||| ||  ||||||| |||||||| ||| ||| | ||||||  | ||||| ||||||    
T  26803207 aatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtatttaacagtgaaccttcaccacctaattttttcacttttcatcatct 26803108  T
Q  243 tctctcttc 251  Q
    |||||||||    
T  26803107 tctctcttc 26803099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 40110643 - 40110535
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatct 242  Q
    ||||||||  ||||||||||| |||||||||| ||||||||| ||| ||  |||||||  ||||||| ||| ||| | ||||||  | ||||| ||||||    
T  40110643 aatgtataaaattattgatatgattttaaccatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatct 40110544  T
Q  243 tctctcttc 251  Q
    |||||||||    
T  40110543 tctctcttc 40110535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 50679888 - 50679841
Alignment:
Q  67 ttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||    
T  50679888 ttaactataaagtgtctcaatttggtcccataagtcttcctccgttta 50679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 36509826 - 36509907
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||||| ||||| ||  |||||||| || ||| |||||||||| |||||| |||||  |||||||    
T  36509826 cccttaacttattttattttctcagtttggtcccttaactataaagtgtttcaatttggttccataaatcttctgccgttta 36509907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 14764244 - 14764316
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    |||||||||||||||||||| |  ||||||||  |||| |||||| ||||| ||||||||| |||||||||||    
T  14764244 cccttaacttattttatttttttagtttgatcccttaattattaagtgtgttaatttggtctcataagtcttc 14764316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 22167776 - 22167875
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||    |||||||||||||||| |||||| ||||  ||  |||| |||||| ||| ||||||||||||||||| |||||  |||||||    
T  22167776 cttaatacatcccctaatcccttaacttattttaatttctcagtttagtcccttaaatattaagtgtttcaatttggtcccataaatcttctgccgttta 22167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 6048071 - 6048153
Alignment:
Q  169 taaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatcttctctcttc 251  Q
    |||||| ||||||| ||||| ||  ||| ||| |||||||||||| ||| | |||||| |  |||||||||||||||||||||    
T  6048071 taaccatttgattggaggtccattgtatctaatagtgaaccatcaacacctaatttttttccttttcttcatcttctctcttc 6048153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 40812734 - 40812653
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttatttt-ctcgtttgatcatttaactattaattgtgtcaatttggt 92  Q
    ||||| |||||||||||||  |  |||||||||||||||||||| || ||||| ||  ||||||||||| ||| ||||||||||    
T  40812734 ttttggcttaatacatcccggt--cccttaacttattttattttcctagtttggtcccttaactattaagtgtctcaatttggt 40812653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 38473546 - 38473434
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgat-ttttatagttttcttcatc 241  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||| | |||||||||||    
T  38473546 aatgtatattaatcttgatatcattttaaccacttgattgcaggtctatagtatctaagagtgaaccatcaacacttgattttttacaattttcttcatc 38473447  T
Q  242 ttctctcttcatc 254  Q
    |||||||||||||    
T  38473446 ttctctcttcatc 38473434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 8188301 - 8188220
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  8188301 cccttaacttattttattttttcagtttgatcctttaactattaagtgtgtcaatttggtcctataagtcttcctccattta 8188220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 22819671 - 22819569
Alignment:
Q  13 tgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgt 111  Q
    |||||||||||||| ||  |||||||||||||||||||||||||  |||||||  ||||||||||| ||| ||||||||||||||||| |||||  ||||    
T  22819671 tgacttaatacatctcccggccccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataactcttctgccgt 22819572  T
Q  112 tta 114  Q
    |||    
T  22819571 tta 22819569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 12831039 - 12830967
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||| ||| |||||||||||| |||| |||||    
T  12831039 cccttaacttattttattttctcagtttgatcccttaactattaagtgtctcaatttggtcctataactcttc 12830967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 12863017 - 12862947
Alignment:
Q  36 cttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||||||||| ||||||||  ||||||||||| ||| |||||||||||| |||| |||||    
T  12863017 cttaacttattttattttctcagtttgatcccttaactattaagtgtctcaatttggtcctataactcttc 12862947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 11907286 - 11907201
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    ||||| ||||||||||||||  | |||||||||||||||| |||||| ||||| ||  ||||||||||| ||| ||||||||||||    
T  11907286 ttttggcttaatacatcccccggtcccttaacttattttaatttctcagtttggtcccttaactattaaatgtttcaatttggtcc 11907201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 30253637 - 30253682
Alignment:
Q  69 aactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  30253637 aactattaagtgtgtcaatttggtctcataagtcttcctccattta 30253682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 15857719 - 15857648
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||||||||||||||||||| ||||| ||  |||||||| || ||| |||||||| |||||||| ||||    
T  15857719 cccttaacttattttattttctcagtttggtcccttaactataaagtgtttcaatttgttcccataaatctt 15857648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 18695714 - 18695667
Alignment:
Q  67 ttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||| || ||| ||||||||||||||||||||||| ||||||||    
T  18695714 ttaactataaagtgtctcaatttggtcccataagtcttcatccgttta 18695667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 114
Target Start/End: Complemental strand, 21389194 - 21389163
Alignment:
Q  83 tcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||||||||||||||    
T  21389194 tcaatttggtcccataagtcttcctccgttta 21389163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 42510111 - 42510210
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||    ||||||| |||||||||||| || ||||| ||  |||||||| || ||| ||||||||||||||||| |||||  |||||||    
T  42510111 cttaatacatcccctgatcccttaatttattttattttttcagtttggtcccttaactataaagtgtctcaatttggtcccataaatcttctgccgttta 42510210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 223276 - 223322
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| | ||||||||||||||||||||||||||||||    
T  223276 taactataaagtgtattaatttggtcccataagtcttcctccgttta 223322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 8187160 - 8187252
Alignment:
Q  12 ttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||| ||  | ||||||| ||||||||||||||| |||| ||| || ||||||||| ||||||||||| ||| ||||| |||||    
T  8187160 ttgacttaatacatctccg-gtcccttaatttattttattttctcagtttaatcctt-aactattaaatgtgtcaatttagtctcataattcttc 8187252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 24761845 - 24761801
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttct 55  Q
    ||||||||||||||||||| | | ||||||||||||||||||||||    
T  24761845 ttttgacttaatacatcccta-gtcccttaacttattttattttct 24761801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 32735580 - 32735499
Alignment:
Q  34 cccttaacttattttattttctcg-tttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||| ||||||||||||||  |||||||  |||| |||||| ||| | ||||||||||||||| |||||  |||||||    
T  32735580 cccttaacatattttattttctcaatttgatcccttaattattaaatgttttaatttggtcccataactcttctgccgttta 32735499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 8188176 - 8188108
Alignment:
Q  158 tgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgattttt 226  Q
    |||||| |||||||||| ||||||||| ||| || ||||||||  ||||||||||| ||| | ||||||    
T  8188176 tgatatgattttaaccatttgattgcatgtccattatatttaatggtgaaccatcaacacctaattttt 8188108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 27897817 - 27897920
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatattt-aagagtgaaccatcagcacttgatttttatagttttcttcatc 241  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| | |||| ||||||||    
T  27897817 aatgtatattattcttgatatcattttaaccacttgattgcaggtctataatatttaaagagtgaaccatcgacacttgattttaacagttctcttcatc 27897916  T
Q  242 ttct 245  Q
    ||||    
T  27897917 ttct 27897920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 132118 - 132019
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||  | | ||||||||||||||||||||||| ||||| ||  ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  132118 cttaatacatccttaggtcccttaacttattttattttctcagtttggtcccttaactattaagtgtgtcgatttggtcccataagtcttcctccgttta 132019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 10257505 - 10257416
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    |||||||||||||  || |||||||||||||||||||||||  |||||||  ||||||||||| ||| ||||||||||||||||| ||||    
T  10257505 cttaatacatcccactgtcccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataactctt 10257416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 35315323 - 35315251
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||||||||||| ||||||||  |||| |||||| | |||||||||||||||||||||||||    
T  35315323 cccttaacttattttattttctcagtttgatcccttaattattaagtatgtcaatttggtcccataagtcttc 35315251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 4167466 - 4167538
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||| ||| ||||||||||    
T  4167466 cccttaacttattttattttctcagtttaatcccttaactattaagtgtgtcaatttgatcctataagtcttc 4167538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 4168950 - 4168879
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||||||||||||||||||| ||||||||  |||||||| || ||||||||||||||| || |||||||    
T  4168950 cccttaacttattttattttctcagtttgatcccttaactataaagtgtgtcaatttggtctcacaagtctt 4168879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 33459609 - 33459563
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||    
T  33459609 taactataaagtgtctcaatttggtcccataagtcttcctccgttta 33459563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 35484428 - 35484339
Alignment:
Q  17 ttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    |||||||||| ||| | ||||||||||||||||||| ||| ||||| || ||||||||| || | | ||||||| ||||||||| |||||    
T  35484428 ttaatacatctccaggtcccttaacttattttatttcctcagtttggtcctttaactataaagtatttcaatttagtcccataactcttc 35484339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 17288286 - 17288242
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgtt 112  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||    
T  17288286 taactataaagtgtctcaatttggtcccataagtcttcctccgtt 17288242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 28326364 - 28326275
Alignment:
Q  160 atatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatcttctctcttc 251  Q
    |||| |||||||||| ||||||||| ||| || |||||||| |||||||| || |||| | |||||| |  ||||  |||||||||||||||    
T  28326364 atatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaatttttttcatttt--tcatcttctctcttc 28326275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 37781949 - 37782033
Alignment:
Q  11 tttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    |||| |||||||||||||   | ||||||| |||||||| |||||| ||||| |  |||||||||||| ||| ||||||||||||    
T  37781949 tttggcttaatacatccctcggtcccttaaattattttaatttctcagtttggttctttaactattaaatgtttcaatttggtcc 37782033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 48443 - 48338
Alignment:
Q  147 tatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgat-ttttatagttttcttcatcttct 245  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||  ||||||||||||||||    
T  48443 tatattattcttgatataattttaaccacttgattgcaggtctatagtatctaagagtgaaccatcaacacttgattttttacggttttcttcatcttct 48344  T
Q  246 ctcttc 251  Q
    ||||||    
T  48343 ctcttc 48338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 47110 - 47166
Alignment:
Q  58 tttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||  |||||| | |||||| ||||||||||||||||| ||||| ||||||||    
T  47110 tttgatcccttaactttaaattgtctcaatttggtcccataaatcttcttccgttta 47166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 22621258 - 22621154
Alignment:
Q  11 tttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctcc 109  Q
    |||| |||||||||||||   | ||||||||||||||||||||||| ||||||||  ||||||||||| |||| |||||||||||||||||||||||||     
T  22621258 tttggcttaatacatccctcggtcccttaacttattttattttctcagtttgatcccttaactattaagtgtggcaatttggtcccataagtcttcctct 22621159  T
Q  110 gttta 114  Q
    |||||    
T  22621158 gttta 22621154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 41522789 - 41522708
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||  |||||||    
T  41522789 cccttaacttattttattttctcagtttaatcatttaactattaagtgtgtcaatttggtcctataagtcttctgccgttta 41522708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 22619892 - 22619991
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||||||||   | ||||||||||||||||||||||| ||||||||  |||||| |||| ||||||||||||||||||||| |||||||| |||||    
T  22619892 cttaatacatcccacggtcccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataaatcttcctctgttta 22619991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 34616144 - 34616215
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||||||||||||||||||| ||||||||  |||||||| || ||| ||||||||||||||||| ||||    
T  34616144 cccttaacttattttattttctcagtttgatctcttaactataaagtgtctcaatttggtcccataaatctt 34616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 8095344 - 8095425
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccat 97  Q
    ||||||||||||||  | ||||||||||||||||||||||| ||||| ||  ||||||||||| ||| |||||||||||||||    
T  8095344 cttaatacatccccg-gtcccttaacttattttattttctcagtttggtcccttaactattaagtgtctcaatttggtcccat 8095425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 34617314 - 34617215
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||||| |||  | |||||||||| |||| ||||| | ||||||||  ||||||||||| ||||||||||| ||||||||  ||||| ||||||||    
T  34617314 cttaatacattccccggtcccttaacttttttttttttcccagtttgatccattaactattaagtgtgtcaatttagtcccatagctcttcttccgttta 34617215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 24068380 - 24068426
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||    
T  24068380 taactataaagtgtctcaatttggtcccataagtcttcctccgttta 24068426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 31844518 - 31844579
Alignment:
Q  165 attttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgattttt 226  Q
    |||||||||||||||||||| ||||||  || |||| |||||||||||||||| | ||||||    
T  31844518 attttaaccacttgattgcatgtctattgtaattaacagtgaaccatcagcacctaattttt 31844579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 4534031 - 4534110
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    |||||||||||||   | |||||||||||||||| |||||| ||||| || ||||| |||||| ||| ||||||||||||    
T  4534031 cttaatacatccctcagtcccttaacttattttaatttctcagtttggtcctttaaatattaaatgtttcaatttggtcc 4534110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 41521332 - 41521403
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    |||||||||||||||||||| || ||||||||  |||||||| || ||||| ||||||||| || |||||||    
T  41521332 cccttaacttattttattttttcagtttgatcccttaactataaagtgtgttaatttggtctcacaagtctt 41521403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 38123 - 38219
Alignment:
Q  157 ttgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttat--agttttcttcatcttctctcttc 251  Q
    ||||||| |||||||||| || |||||| ||| ||  ||||||| |||||||| ||||||| | |||||| |  | ||||| |||||||||||||||    
T  38123 ttgatatgattttaaccatttaattgcatgtccattgtatttaacagtgaaccgtcagcacctaatttttttccacttttcatcatcttctctcttc 38219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 22621125 - 22621017
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatct 242  Q
    ||||||||  ||| ||||||| ||||||| || ||||||||| ||| ||  |||||||  ||||||| ||| ||| | ||||||  | ||||| ||||||    
T  22621125 aatgtataaaattcttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatct 22621026  T
Q  243 tctctcttc 251  Q
    |||||||||    
T  22621025 tctctcttc 22621017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 41348236 - 41348335
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||  | || |||||||||||||||||||| ||||||||  ||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  41348236 cttaatacatcccctggtcctttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttgatcccataagtcttcctccattta 41348335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 50531881 - 50531786
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||| |||||||||||||  || |||||||||||||||||||||||  |||||||  ||||||||||| ||| ||||||||||||||||| ||||    
T  50531881 ttttggcttaatacatcccactgtcccttaacttattttattttctcaatttgatcccttaactattaagtgtctcaatttggtcccataactctt 50531786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 38417550 - 38417639
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    |||||||||||| | || || |||||||||||||||||||| ||||| ||  ||||||||||| ||||||||||||||||||||| ||||    
T  38417550 cttaatacatcctcctgtcctttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcccataaatctt 38417639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 41349626 - 41349545
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||| ||||||||| ||||    
T  41349626 cccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttgatcccataaatcttcctccattta 41349545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 50530518 - 50530590
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||||||||||| ||||| || |||||||||||| ||| ||||  ||||||||||| |||||    
T  50530518 cccttaacttattttattttctcagtttggtcctttaactattaagtgtctcaaaatggtcccataactcttc 50530590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 34439779 - 34439680
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||||||||   | ||||||||||||||||||||||| || || ||  |||||||| || ||| ||||||||||||||||| |||||  |||||||    
T  34439779 cttaatacatccctcagtcccttaacttattttattttctcagtgtggtcccttaactataaaatgtttcaatttggtcccataaatcttctgccgttta 34439680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 38419116 - 38419037
Alignment:
Q  36 cttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||| |||| ||   |||| |||||| ||||||||||||||| |||||||||||  |||||||    
T  38419116 cttaacttattttattttctcagtttaattccttaattattaagtgtgtcaatttggtctcataagtcttctgccgttta 38419037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 46796092 - 46796046
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||    
T  46796092 taactataaagtgtctcaatttggtcccataagtcttcctccgttta 46796046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 11482787 - 11482872
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    ||||| ||||||||||| ||  | |||||||||||||||| |||||| ||||| ||  ||||||||||| ||| ||||||||||||    
T  11482787 ttttggcttaatacatctcccggtcccttaacttattttaatttctcagtttggtcccttaactattaaatgtttcaatttggtcc 11482872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 26631185 - 26631124
Alignment:
Q  165 attttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgattttt 226  Q
    |||||||||||||||||||| ||||||  ||||||| |||||| ||||||||| | ||||||    
T  26631185 attttaaccacttgattgcatgtctattgtatttaacagtgaatcatcagcacctaattttt 26631124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 6139012 - 6139083
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||||||||||||||||||| ||||| ||  |||| |||||| ||| ||||||||||| ||||| ||||    
T  6139012 cccttaacttattttattttctcagtttggtcccttaattattaaatgtctcaatttggtctcataactctt 6139083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 34438423 - 34438502
Alignment:
Q  36 cttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||| ||||  ||  |||||||| || ||| ||||||||||||||||| |||||  |||||||    
T  34438423 cttaacttattttattttctcagtttagtcccttaactataaagtgtctcaatttggtcccataaatcttctgccgttta 34438502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 38554068 - 38554163
Alignment:
Q  157 ttgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttat-agttttcttcatcttctctcttc 251  Q
    ||||||| |||||||||| ||||| ||| ||| ||  ||||||| |||||||| ||| ||||| |||||| | | ||||| |||||||||||||||    
T  38554068 ttgatatgattttaaccatttgatcgcacgtccattgtatttaatagtgaaccgtcatcacttaatttttttcacttttcatcatcttctctcttc 38554163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 46796003 - 46795908
Alignment:
Q  157 ttgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttat-agttttcttcatcttctctcttc 251  Q
    ||||||| |||||||||| ||||||||| ||| ||  ||||||| |||||||| || |||| | |||||| | | ||||| |||||||||||||||    
T  46796003 ttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaatttttttcacttttcatcatcttctctcttc 46795908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 17319039 - 17319129
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||| ||  | | |||||||||||||| |||||| ||||||||  |||||||| || ||| |||||||||| |||||| |||||    
T  17319039 cttaatacatcacccggtctcttaacttattttaatttctcagtttgatctcttaactataaagtgtttcaatttggttccataaatcttc 17319129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 38553979 - 38554025
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| ||||||||||| ||||||||||||||||||||    
T  38553979 taactataaagtgtctcaatttggtctcataagtcttcctccgttta 38554025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 43419494 - 43419404
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||| ||  | ||||||||||||||||||||||| ||||  ||  |||||||| || ||| ||||||||||||| ||| |||||    
T  43419494 cttaatacatctcccggtcccttaacttattttattttctcagtttcgtcccttaactataaagtgtctcaatttggtcccttaactcttc 43419404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 44159103 - 44159181
Alignment:
Q  37 ttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||| || ||||||||  ||||||||||| ||| |||||||||| ||| || |||||  |||||||    
T  44159103 ttaacttattttattttttcagtttgatctcttaactattaagtgtttcaatttggttccacaactcttctgccgttta 44159181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 47667228 - 47667274
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| ||||||||||| ||||||||||||||||||||    
T  47667228 taactataaagtgtctcaatttggtctcataagtcttcctccgttta 47667274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 49895195 - 49895277
Alignment:
Q  169 taaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatcttctctcttc 251  Q
    |||||| |||||||||||||  |  ||| ||| |||||||||||| ||| | |||||| |  |||||||||||||||||||||    
T  49895195 taaccatttgattgcaggtccgttgtatctaatagtgaaccatcaacacctaatttttttccttttcttcatcttctctcttc 49895277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 43708827 - 43708912
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    ||||| ||||||||||||||  | | |||||||||||||| |||||| ||||  ||  ||||||||||| ||| ||||||||||||    
T  43708827 ttttggcttaatacatcccccggtctcttaacttattttaatttctcagtttagtccattaactattaaatgtttcaatttggtcc 43708912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 26393228 - 26393156
Alignment:
Q  34 cccttaacttattttat-tttctcgtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||| | ||| |  ||||||| ||||||||| || ||| ||||||||||||||||| |||||    
T  26393228 cccttaacttattttttatttttattttgatcctttaactataaagtgtctcaatttggtcccataactcttc 26393156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 27408803 - 27408859
Alignment:
Q  58 tttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||| |||| ||||||| || ||| ||||||||||||||||| ||||| ||||||||    
T  27408803 tttggtcatctaactataaagtgtctcaatttggtcccataaatcttcttccgttta 27408859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 40146691 - 40146647
Alignment:
Q  66 tttaactattaattgtgtcaatttggtcccataagtcttcctccg 110  Q
    ||||||||| || ||| ||||||||||||||||||||||| ||||    
T  40146691 tttaactataaagtgtctcaatttggtcccataagtcttcttccg 40146647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 41348364 - 41348472
Alignment:
Q  143 aatgtatattattattgatatcattttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatct 242  Q
    ||||||||  ||| ||||||| ||||||| || ||||||||| ||| ||  |||||||  ||||||| ||| ||| | ||||||  | ||||| ||||||    
T  41348364 aatgtataaaatttttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatct 41348463  T
Q  243 tctctcttc 251  Q
    |||||||||    
T  41348464 tctctcttc 41348472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 21127940 - 21128021
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||||||||||||||| || ||||||||  ||||||||||| ||||||||||||||||||||| |||||  |||||||    
T  21127940 cccttaacttattttattttttcagtttgatctcttaactattaagtgtgtcaatttggtcccataactcttctgccgttta 21128021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 43346547 - 43346476
Alignment:
Q  35 ccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||| ||||| |||||    
T  43346547 ccttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttggtctcataactcttc 43346476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 48867531 - 48867450
Alignment:
Q  34 cccttaacttattttattttctcg-tttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    |||||||||||||||||||||||  |||| ||  ||||||||||| ||||||||||||||||||| |||||| || ||||||    
T  48867531 cccttaacttattttattttctcaatttggtcccttaactattaagtgtgtcaatttggtcccattagtctttctacgttta 48867450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 50150708 - 50150797
Alignment:
Q  6 attattttgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    ||||| ||| ||||||||||||||  | |||||||||||||||| |||||| ||||| ||| ||||||||||| ||| ||||||||||||    
T  50150708 attatgttggcttaatacatccccgggtcccttaacttattttaatttctcagtttggtcacttaactattaaatgtttcaatttggtcc 50150797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 48866158 - 48866237
Alignment:
Q  36 cttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||||||||||||||||| ||||  ||  | ||||||||| |||||||||||||||| |||||||||| ||||||||    
T  48866158 cttaacttattttattttctcagtttagtccctgaactattaagtgtgtcaatttggtcctataagtcttcttccgttta 48866237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 43345316 - 43345406
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    |||||||||||||||   ||||||||||||||||||||||| ||| | ||  |||||||| || ||| ||||||||||||||||| |||||    
T  43345316 cttaatacatccccagatcccttaacttattttattttctcagttaggtcccttaactataaaatgtttcaatttggtcccataaatcttc 43345406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 12062506 - 12062421
Alignment:
Q  13 tgacttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccat 97  Q
    ||||||||||||||| |  | |||||||||||||||||||| || ||||| ||  ||||||||||| ||| |||||||||||||||    
T  12062506 tgacttaatacatcctccggtcccttaacttattttattttttcagtttggtcccttaactattaagtgtctcaatttggtcccat 12062421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 7921762 - 7921682
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtccc 95  Q
    |||||||||||| |  | ||||||||||||||| ||||||| ||||||||| ||||||||||| ||| |||| ||||||||    
T  7921762 cttaatacatcctccggtcccttaacttattttgttttctcagtttgatcacttaactattaagtgtctcaaattggtccc 7921682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 23559816 - 23559906
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    |||||||||| |||  | ||||||||||||||||||||||| ||||| ||  |||| |||||| ||| |||||||| |||||||| |||||    
T  23559816 cttaatacattccccggtcccttaacttattttattttctcagtttggtcccttaattattaagtgtctcaatttgatcccataattcttc 23559906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 23561244 - 23561154
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||    ||||||||||||||||||||||| ||||||||  |||| |||||| ||| | |||||||||| |||| |||||    
T  23561244 cttaatacatcccccgatcccttaacttattttattttctcagtttgatcccttaattattaagtgtcttaatttggtcctataattcttc 23561154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 47767017 - 47766971
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||    
T  47767017 taactataaagtgtctcaatttggtcccataagtcttcctccgttta 47766971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 48252983 - 48253029
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||    
T  48252983 taactataaagtgtctcaatttggtcccataagtcttcctccgttta 48253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 35173144 - 35173233
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtctt 104  Q
    ||||||||||||||  | |||||||||||||||||||||||  ||| |||  ||||||||||| | | ||||||||||| ||||| ||||    
T  35173144 cttaatacatcccccagtcccttaacttattttattttctcaatttcatcccttaactattaagtatttcaatttggtctcataactctt 35173233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 12060656 - 12060731
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttgg 91  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||  ||  ||||||||||| ||| |||||||||    
T  12060656 cttaatacatcccca-gtcccttaacttattttattttctcagtttagtctcttaactattaagtgtctcaatttgg 12060731  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 1031813 - 1031891
Alignment:
Q  16 cttaatacatccccatgccccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtc 93  Q
    ||||||||||||||  | |||||||||||||||| |||||| || || ||  ||||||||||| ||| |||||||||||    
T  1031813 cttaatacatcccccggtcccttaacttattttaatttctcagtgtggtcccttaactattaaatgtttcaatttggtc 1031891  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 10301784 - 10301698
Alignment:
Q  165 attttaaccacttgattgcaggtctataatatttaagagtgaaccatcagcacttgatttttatagttttcttcatcttctctcttc 251  Q
    |||||||||| ||||||| | ||| ||  ||||||| |||||||||||||||| | |||||| |   |||| |||||||||||||||    
T  10301784 attttaaccatttgattgaatgtccattgtatttaacagtgaaccatcagcacataatttttttcactttcatcatcttctctcttc 10301698  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 26798972 - 26798926
Alignment:
Q  68 taactattaattgtgtcaatttggtcccataagtcttcctccgttta 114  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||||||    
T  26798972 taactataaaatgtctcaatttggtcccataattcttcctccgttta 26798926  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 50765875 - 50765814
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcc 94  Q
    ||||||| |||||||| |||||| |||||||| ||||||||||||  || ||||||||||||    
T  50765875 cccttaatttattttaatttctcagtttgatcttttaactattaaacgtttcaatttggtcc 50765814  T

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Target: scaffold0098 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 42447 - 42375
Alignment:
Q  34 cccttaacttattttattttctc-gtttgatcatttaactattaattgtgtcaatttggtcccataagtcttc 105  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||| |||||||| |||||    
T  42447 cccttaacttattttattttctcagtttgatcccttaactattacgtgtatcaatttgatcccataaatcttc 42375  T

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Target: scaffold0166 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 4342 - 4298
Alignment:
Q  10 ttttgacttaatacatccccatgccccttaacttattttattttct 55  Q
    ||||||||||||||||||| | | ||||||||||||||||||||||    
T  4342 ttttgacttaatacatcccta-gtcccttaacttattttattttct 4298  T

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