View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_158 (Length: 264)
Name: NF0583_low_158
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_158 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 16771372 - 16771163
Alignment:
| Q |
22 |
agcagagaaaacccttaatggaacaaagcatgtgcaaatttgttgtggctttactagttaattataagcacctcaattacatttacaaatttgtaagcca |
121 |
Q |
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| T |
16771372 |
agcacagaaaacccttaatggaacaaagcatgtgcaaatttgttgtggctttactagttaattataagcacgtcaattacatttacaactttgtaagcca |
16771273 |
T |
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| Q |
122 |
ctataaaataaatttctctccttatgaatatttcaaaatggtcaaatctcactcatattagtcctgatgaaaacatgtttgggactaattgaaagtaaat |
221 |
Q |
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| T |
16771272 |
ctatcaaataaatttctctccttatgaatatttcaaaatggtcaaatctcactcatattagtcctaatgaaaacatgtttgggactaattgaaagtaaat |
16771173 |
T |
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| Q |
222 |
agttaaagat |
231 |
Q |
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|||||||||| |
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| T |
16771172 |
agttaaagat |
16771163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 16778966 - 16778821
Alignment:
| Q |
95 |
caattacatttacaaatttgtaagccactataaaataaatttctctccttatgaatatttcaaaatg------------gtcaaatctcactcatattag |
182 |
Q |
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||||||||| ||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
16778966 |
caattacatctacaactttgtaaaccactatcaaataagtttctctccttatgaatatttcaaaatggtccctaactttgtcaaatttcactcatattaa |
16778867 |
T |
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| Q |
183 |
tcctgatgaaaacatgtttgggactaattgaaagtaaatagttaaa |
228 |
Q |
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| T |
16778866 |
tccttatgaaaacatggtatggactaattgataataaatagttaaa |
16778821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 16779009 - 16778966
Alignment:
| Q |
27 |
agaaaacccttaatggaacaaagcatgtgcaaatttgttgtggc |
70 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
16779009 |
agaaaacccttaatggaacaaagtatgtacaaatttgttgtggc |
16778966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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