View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_16 (Length: 648)
Name: NF0583_low_16
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 30 - 640
Target Start/End: Complemental strand, 2816881 - 2816272
Alignment:
| Q |
30 |
ccttcatggttcgtaactctggaactgtttagaagttaacttccaactcctgatcactcaagtttgggagttacgaccagatacaccttgaacataatag |
129 |
Q |
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| T |
2816881 |
ccttcatggttcgtaactctggaactgtttagaagttaacttccaactcctgatcgctcaagtttgggagttacgaccagatacgccttgaacataatag |
2816782 |
T |
|
| Q |
130 |
aacacgcatgttctgtttcctcataacataacacaggatggttactttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatgatactctg |
229 |
Q |
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|||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816781 |
aacatgcatgttctatttccccataacataacacgggatggttactttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatgatactctg |
2816682 |
T |
|
| Q |
230 |
gacactttgtagatatgcgggctggttcagaccatagtgttggatggcataaaaaattatgatgatctatatggtattatgaaataaatttcccatgaaa |
329 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816681 |
gacactttgtagatatgcgggctggttcggaccatagtgtcg-atggcataaaaaattatgatgatctatatggtattatgaaataaatttcccatgaaa |
2816583 |
T |
|
| Q |
330 |
catagccgatcaatatgtttcgagtcacacgtagaaaggggacattattatgactatgtattttgatttttcctaatttttctgatgaacgacgtatatc |
429 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
2816582 |
catagccgatcaatctgtttcgagtcacacgtagaaaggggacattattatgactatgtattttgatttttcccaatttttctgacgaacaacgtatatc |
2816483 |
T |
|
| Q |
430 |
ggtatttaaataccgtagcaattatgactcccatgacttatatgactttttatgactttgatgagaaaataaatatgtatgaatatcgaaattgtgtgtg |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2816482 |
ggtatttaaataccgtagcaattatgactcccatgacttagatgactttttatgactttgatgagaaaataaatatctatgaatatcgaaattgtgtgtg |
2816383 |
T |
|
| Q |
530 |
ttgaatgaatttaaatgtgtatattggaaccgaatatgtatgaatgttgatatttgagtcctctttgtaagctttcttcaacccgaatgtaattttaact |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2816382 |
ttgaatgaatttaaatgtgtatattggaaccgaatatgtatgaatgttgatatttgagtcctctttgtaagctttcttcaacccgaatataattttaact |
2816283 |
T |
|
| Q |
630 |
tatttcatctc |
640 |
Q |
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||||||||||| |
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| T |
2816282 |
tatttcatctc |
2816272 |
T |
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