View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_160 (Length: 260)
Name: NF0583_low_160
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_160 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 101 - 247
Target Start/End: Complemental strand, 28213809 - 28213663
Alignment:
| Q |
101 |
caataattcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatatttttgcaagctccctattcaactcttacaacttgaga |
200 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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| T |
28213809 |
caataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtaagctccctattcaactcttacaattagaga |
28213710 |
T |
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| Q |
201 |
tctaggaataattctatgatatgatattgcaagtcacaactgcttct |
247 |
Q |
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| T |
28213709 |
tcttggaataattctatgatatgatattgcaagtcacaactgcttct |
28213663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 28222444 - 28222613
Alignment:
| Q |
80 |
tagtctagtgttgcaaggctgcaataattcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatatttttg--caagctccc |
177 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28222444 |
tagtctagtgttgcaaggctgcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccc |
28222543 |
T |
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| Q |
178 |
tattcaactcttacaacttgagatctaggaataattctatgatatgatattgcaagtcacaactgcttct |
247 |
Q |
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| T |
28222544 |
tattcaactcttacaattatagatcaaggaatcattcttagatatgataatacaagtcacagctgcttct |
28222613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 108 - 247
Target Start/End: Original strand, 32311014 - 32311155
Alignment:
| Q |
108 |
tcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatatttttgca--agctccctattcaactcttacaacttgagatctag |
205 |
Q |
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| T |
32311014 |
tcaaagtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattagagatcaat |
32311113 |
T |
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| Q |
206 |
gaataattctatgatatgatattgcaagtcacaactgcttct |
247 |
Q |
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| T |
32311114 |
aaatgattcttagatatgatattgcaagtcacaactgcttct |
32311155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 28222338 - 28222436
Alignment:
| Q |
1 |
cacacatttgatggtagttttggccatgtgttaaatgttgacagaatttataaattttgatggtgctgtgttaaatgtttagtctagtgttgcaaggctg |
100 |
Q |
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| T |
28222338 |
cacacatttgatggtagttttagccatgtgttaaatgtttacagaatttatagattttgatggtactgtgttaaat-----gtctagtattgcaaggctg |
28222432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 32813573 - 32813371
Alignment:
| Q |
41 |
acagaatttataaattttgatggtgctgtgttaaa---tgtttagtctagtgttgcaaggctgcaataatt----------caaagtgttttgttatgcc |
127 |
Q |
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| T |
32813573 |
acagaatttattgattttgatggaactgtgttaaaaactgtttactttagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgtt |
32813474 |
T |
|
| Q |
128 |
ttaataaaacttggattccaaggtattgaagtatatttttg--caagctccctattcaactcttacaacttgagatctaggaataattctatgatatgat |
225 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| | ||| ||||| |||||||| |
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| T |
32813473 |
ttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattagagatcaataaatgattcttagatatgat |
32813374 |
T |
|
| Q |
226 |
att |
228 |
Q |
| |
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||| |
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| T |
32813373 |
att |
32813371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28213946 - 28213869
Alignment:
| Q |
1 |
cacacatttgatggtagttttggccatgtgttaaatgttgacagaatttataaattttgatggtgctgtgttaaatgt |
78 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |
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| T |
28213946 |
cacacatttgagggtagttttggccatgtgttaaatgtttacagaatttatagattttgatggtactgtgttaaatgt |
28213869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 32563836 - 32563749
Alignment:
| Q |
108 |
tcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatat--ttttgcaagctccctattcaactcttacaa |
193 |
Q |
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|||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
32563836 |
tcaaagtgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttttataagctccctattcagctcttacaa |
32563749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 32792690 - 32792594
Alignment:
| Q |
108 |
tcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatatttttg--caagctccctattcaactcttacaacttgagatc |
202 |
Q |
| |
|
||||| |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| | |||||| |
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| T |
32792690 |
tcaaattgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttgtataagctccgtattgaactcttacaattagagatc |
32792594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 32799387 - 32799249
Alignment:
| Q |
43 |
agaatttataaattttgatggtgctgtgttaaa---tgtttagtctagtgttgcaaggctgcaataatt----------caaagtgttttgttatgcctt |
129 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||| |||||| |||||||||||||||||||||||| | ||||||||| | ||||||||| |
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| T |
32799387 |
agaatttataaatttttgtggcactgttttaaaatatgtttactctagtgttgcaaggctgcaataaatatcaacaaatcaaagtgttcttttatgcctt |
32799288 |
T |
|
| Q |
130 |
aataaaacttggattccaaggtattgaagtatatttttg |
168 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||| |
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| T |
32799287 |
attaaaacttagattccaaggtattgaagtatatttttg |
32799249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 32785171 - 32785122
Alignment:
| Q |
114 |
tgttttgttatgccttaataaaacttggattccaaggtattgaagtatat |
163 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32785171 |
tgttctgttatgccttattaaaacttggattccaaggtattgaagtatat |
32785122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 32790339 - 32790310
Alignment:
| Q |
218 |
gatatgatattgcaagtcacaactgcttct |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32790339 |
gatatgatattgcaagtcacaactgcttct |
32790310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 32799243 - 32799198
Alignment:
| Q |
197 |
gagatctaggaataattctatgatatgatattgcaagtcacaactg |
242 |
Q |
| |
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|||||| |||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
32799243 |
gagatcaaggaatgattcttagatatgatattgcaagtcacaactg |
32799198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 28211836 - 28211804
Alignment:
| Q |
134 |
aaacttggattccaaggtattgaagtatatttt |
166 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |
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|
| T |
28211836 |
aaacttggattccaaggtattgaagtgtatttt |
28211804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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