View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_162 (Length: 255)
Name: NF0583_low_162
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_162 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 10194335 - 10194538
Alignment:
| Q |
18 |
agaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatatttatctttaaatgcgttacttattcaaaatcgaatg |
117 |
Q |
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| T |
10194335 |
agaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatatttatctttaaatgcgttacttattcaaaatagaatg |
10194434 |
T |
|
| Q |
118 |
ctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtttaaatccactaaagctaatcagcaaaatcacag |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10194435 |
ctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtttaaatccactaaagctaatcagcaaaatcacag |
10194534 |
T |
|
| Q |
218 |
gttc |
221 |
Q |
| |
|
|||| |
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|
| T |
10194535 |
gttc |
10194538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 19459304 - 19459169
Alignment:
| Q |
86 |
ctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgttt |
185 |
Q |
| |
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|||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
19459304 |
ctttgaatgcgttacttgttcaaaatcaaactctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaatacggttt |
19459205 |
T |
|
| Q |
186 |
aaatccactaaagctaatcagcaaaatcacaggttc |
221 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
19459204 |
aaatccactgaagctaatcagcaaaatcacaggttc |
19459169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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