View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_169 (Length: 252)

Name: NF0583_low_169
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_169
NF0583_low_169
[»] chr6 (14 HSPs)
chr6 (115-242)||(4254443-4254570)
chr6 (1-58)||(4254627-4254684)
chr6 (146-236)||(34187630-34187721)
chr6 (115-213)||(6197945-6198044)
chr6 (121-227)||(30465338-30465445)
chr6 (130-236)||(3807213-3807321)
chr6 (130-227)||(4408915-4409013)
chr6 (128-227)||(17957178-17957278)
chr6 (9-52)||(4257937-4257980)
chr6 (117-227)||(10313444-10313555)
chr6 (187-238)||(5644601-5644653)
chr6 (128-213)||(24672416-24672502)
chr6 (188-241)||(11458643-11458696)
chr6 (188-239)||(843984-844036)
[»] chr2 (8 HSPs)
chr2 (146-239)||(8794739-8794832)
chr2 (146-237)||(27694423-27694516)
chr2 (119-241)||(24490454-24490577)
chr2 (128-227)||(30640945-30641044)
chr2 (115-213)||(31994657-31994756)
chr2 (128-176)||(39293083-39293131)
chr2 (133-216)||(34904164-34904247)
chr2 (135-212)||(29242495-29242573)
[»] chr8 (9 HSPs)
chr8 (115-238)||(10467391-10467516)
chr8 (115-240)||(26938772-26938899)
chr8 (130-227)||(16483918-16484016)
chr8 (117-236)||(42023896-42024017)
chr8 (115-236)||(39344718-39344841)
chr8 (128-183)||(32797081-32797136)
chr8 (128-212)||(12597002-12597087)
chr8 (188-241)||(26938533-26938587)
chr8 (129-237)||(35054939-35055049)
[»] chr7 (12 HSPs)
chr7 (119-238)||(13009272-13009393)
chr7 (128-241)||(27567569-27567684)
chr7 (128-225)||(28098679-28098777)
chr7 (134-227)||(22485092-22485185)
chr7 (128-227)||(30851817-30851917)
chr7 (119-235)||(11297898-11298014)
chr7 (128-227)||(20132202-20132302)
chr7 (157-235)||(30851547-30851627)
chr7 (132-238)||(34471378-34471486)
chr7 (188-235)||(25411457-25411505)
chr7 (128-216)||(28564981-28565069)
chr7 (129-197)||(33991965-33992033)
[»] chr4 (7 HSPs)
chr4 (129-241)||(40391038-40391152)
chr4 (128-238)||(15025924-15026036)
chr4 (117-239)||(38377932-38378055)
chr4 (128-174)||(10574082-10574128)
chr4 (187-236)||(31049885-31049935)
chr4 (164-212)||(6449606-6449655)
chr4 (164-238)||(48282889-48282965)
[»] scaffold0233 (1 HSPs)
scaffold0233 (128-240)||(16830-16943)
[»] chr3 (9 HSPs)
chr3 (119-240)||(39340908-39341032)
chr3 (119-216)||(44446783-44446881)
chr3 (132-238)||(34359483-34359592)
chr3 (129-239)||(20315035-20315147)
chr3 (119-182)||(28769472-28769535)
chr3 (133-237)||(54783217-54783322)
chr3 (115-177)||(41544536-41544598)
chr3 (191-240)||(44648251-44648301)
chr3 (128-237)||(50334542-50334653)
[»] chr5 (13 HSPs)
chr5 (128-217)||(19343700-19343790)
chr5 (115-239)||(38948658-38948783)
chr5 (119-237)||(5459047-5459167)
chr5 (119-182)||(26724251-26724314)
chr5 (119-215)||(16089824-16089921)
chr5 (164-239)||(22860871-22860948)
chr5 (133-235)||(1298845-1298951)
chr5 (121-237)||(3746826-3746943)
chr5 (154-238)||(35270847-35270932)
chr5 (130-237)||(39057091-39057200)
chr5 (132-239)||(15070070-15070180)
chr5 (164-240)||(35529755-35529832)
chr5 (128-178)||(36235902-36235952)
[»] chr1 (5 HSPs)
chr1 (128-227)||(16545330-16545430)
chr1 (129-239)||(33752867-33752979)
chr1 (137-240)||(23230789-23230894)
chr1 (132-213)||(3891594-3891676)
chr1 (128-236)||(29307512-29307622)
[»] scaffold0020 (1 HSPs)
scaffold0020 (132-238)||(152078-152186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (119-213)||(253680-253775)
[»] scaffold0720 (1 HSPs)
scaffold0720 (146-227)||(7414-7495)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 4254570 - 4254443
Alignment:
Q  115 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4254570 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaataaggattaaaagtaaataaaattttgtgaagactaaacttaaaagcttgtaatttta 4254471  T
Q  215 tatggactaaaaaatatttaaccctatg 242  Q
    || ||| |||||||||||||||||||||    
T  4254470 tacggattaaaaaatatttaaccctatg 4254443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4254684 - 4254627
Alignment:
Q  1 ttacttacatactacatactggaacaatatttcactcttagactatggtttagtcctc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4254684 ttacttacatactacatactggaacaatatttcactcttagactatggtttagtcctc 4254627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 34187630 - 34187721
Alignment:
Q  146 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 236  Q
    ||||||| |||||||||| ||||| |||||||| |||||| ||||||||||| |||  |||||||||| || |||||||||| |||||||||    
T  34187630 taaaatgcaaatagggatgaaaagagaataaaaatttgtggagactaaacttaaaaatttgtaattttgtagggactaaaaacatatttaac 34187721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 6197945 - 6198044
Alignment:
Q  115 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaatttt 213  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||| |||  ||||||||||||| |||| ||   ||||||||||||| ||||||||||||    
T  6197945 ggacacttttattcctccaaaatagtccctataaaatgtaaataaggaccaaaagtgaataaacttttcgtagggactaaacttgaaggcttgtaatttt 6198044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 30465445 - 30465338
Alignment:
Q  121 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatgg 219  Q
    |||||| |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| ||    
T  30465445 ttttaatcctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataagg 30465346  T
Q  220 actaaaaa 227  Q
    ||||||||    
T  30465345 actaaaaa 30465338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 3807213 - 3807321
Alignment:
Q  130 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag--actaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    ||||||||||||||| ||||||||||| | |||  ||||||||||||| |||| || ||  |||||||||||||| |||||||||| || | ||||||||    
T  3807213 tccaaaatagtccttataaaatgaaaacaaggaccaaaagtgaataaactttt-tgtaggaactaaacttgaaagtttgtaattttttaggaactaaaaa 3807311  T
Q  228 -atatttaac 236  Q
     |||||||||    
T  3807312 catatttaac 3807321  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 4409013 - 4408915
Alignment:
Q  130 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    ||||||||||||| | ||||||| ||||||| | ||||||||||| |||||||||| | || ||||||| |||| ||||||||||| |  |||||||||    
T  4409013 tccaaaatagtccctataaaatgtaaataggaactaaaagtgaataaaaattttgtaaggattaaacttaaaagtttgtaattttacagagactaaaaa 4408915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 17957178 - 17957278
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 226  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||| | | |||||||  |||||||||||||||||||| | |||||||    
T  17957178 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttataaggactaaatgtgaaagcttgtaattttataagaactaaaa 17957277  T
Q  227 a 227  Q
    |    
T  17957278 a 17957278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 4257980 - 4257937
Alignment:
Q  9 atactacatactggaacaatatttcactcttagactatggttta 52  Q
    ||||||||||||| |||||||||| |||||||||||||||||||    
T  4257980 atactacatactgcaacaatattttactcttagactatggttta 4257937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 10313444 - 10313555
Alignment:
Q  117 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattt-tgtgaagactaaacttgaaagcttgtaattttat 215  Q
    |||||||||  ||||||||||||||| | ||||||| ||||| ||| ||||| | |||||  ||| |||  ||||||||||| ||||||||||||||| |    
T  10313444 acacttttagtcctccaaaatagtccctataaaatgcaaataaggactaaaaataaataatttttctgtagagactaaacttaaaagcttgtaattttgt 10313543  T
Q  216 atggactaaaaa 227  Q
    | | ||||||||    
T  10313544 aagaactaaaaa 10313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 5644653 - 5644601
Alignment:
Q  187 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 238  Q
    |||||||||||||||  ||||||||||||| |||||||||| |||||||||||    
T  5644653 agactaaacttgaaaatttgtaattttataaggactaaaaacatatttaaccc 5644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 24672416 - 24672502
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaatttt 213  Q
    ||||||||||||||| | ||| ||| |||||||||  || ||||||||||| ||||||   ||||||||| ||||| ||||||||||    
T  24672416 cctccaaaatagtccatttaagatgcaaatagggaccaatagtgaataaaatttttgtagggactaaactagaaagtttgtaatttt 24672502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 11458696 - 11458643
Alignment:
Q  188 gactaaacttgaaagcttgtaattttatatggactaaaaaatatttaaccctat 241  Q
    ||||||||| |||| ||||||||||| || ||||||||| |||||||| |||||    
T  11458696 gactaaactcgaaaacttgtaattttgtagggactaaaatatatttaatcctat 11458643  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 844036 - 843984
Alignment:
Q  188 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 239  Q
    ||||||||||||||| | | | |||||||||||||||||| ||||||||||||    
T  844036 gactaaacttgaaaggtcgcacttttatatggactaaaaacatatttaaccct 843984  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 8794739 - 8794832
Alignment:
Q  146 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 239  Q
    ||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  8794739 taaaatgcaaatagggactaaaagtgaataaaatttt-tgtagactaaacttgaaagcttgcaattttatagggactaaaaacatatttaaccct 8794832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 27694516 - 27694423
Alignment:
Q  146 taaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacc 237  Q
    |||||||  ||||||||||||||||||||||| |||| ||  ||| |||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  27694516 taaaatgtgaatagggattaaaagtgaataaattttttgtagagattaaacttgaaaatttgtaattttatagggactaaaaacatatttaacc 27694423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 24490577 - 24490454
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 218  Q
    |||||||  |||| |||||||||  | ||||||| ||||||||| |||||||||||||  |||| | |  ||||||||| |||||||||||||||| | |    
T  24490577 acttttagtcctctaaaatagtctctataaaatgcaaatagggactaaaagtgaataattttttttaagaactaaacttaaaagcttgtaattttacagg 24490478  T
Q  219 gactaaaaa-atatttaaccctat 241  Q
     ||||||||  |||||||||||||    
T  24490477 aactaaaaacgtatttaaccctat 24490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 30641044 - 30640945
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  ||    ||| |||||||||||||||| ||||| ||| ||| ||||||    
T  30641044 cctccaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaaacatttccgagattaaacttgaaagcttgaaatttaatagggattaaaaa 30640945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 31994756 - 31994657
Alignment:
Q  115 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 213  Q
    |||||||| ||| ||||||||||||||| | ||||||| |||| |||||||||| ||||||||  ||||||  ||| || |||| |||||||||||||||    
T  31994756 ggacacttgtaatcctccaaaatagtccctataaaatgcaaattgggattaaaaatgaataaattttttgtagagattatacttaaaagcttgtaatttt 31994657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 39293131 - 39293083
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa 176  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  39293131 cctccaaaatagtccatataaaatgaaaatagggactaaaagtgaataa 39293083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 34904164 - 34904247
Alignment:
Q  133 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttata 216  Q
    |||||||||||| ||||||| ||||||||| |||| |  |||||  |||| ||| | ||||||||||||||||||||||||||||    
T  34904164 aaaatagtccttttaaaatgcaaatagggactaaatgcaaataagttttt-tgatggactaaacttgaaagcttgtaattttata 34904247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 29242573 - 29242495
Alignment:
Q  135 aatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 212  Q
    |||||||| | ||||||| ||||||||  |||||||||||||  |||| || | |||||||||| ||||||||||||||    
T  29242573 aatagtccctataaaatgcaaataggggctaaaagtgaataatttttttgtaaggactaaacttaaaagcttgtaattt 29242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 10467516 - 10467391
Alignment:
Q  115 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 213  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||||||| ||||| ||||||||  |||||| | ||||||||||||||||||||||||||    
T  10467516 ggacacttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaaatgaataaattttttgtaaggactaaacttgaaagcttgtaatttt 10467417  T
Q  214 atatggac-taaaaaatatttaaccc 238  Q
     || |||| ||||| |||||||||||    
T  10467416 ttagggacttaaaatatatttaaccc 10467391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 26938899 - 26938772
Alignment:
Q  115 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 213  Q
    |||||||||||  ||| ||||||||||| | ||||||| ||||||||| ||||||||||||||  ||||||   |||||||| | |||||||||||||||    
T  26938899 ggacacttttagtccttcaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaattttttgtagggactaaacataaaagcttgtaatttt 26938800  T
Q  214 atatggactaaaaa-atatttaacccta 240  Q
     || |||||||||| |||||||||||||    
T  26938799 gtagggactaaaaacatatttaacccta 26938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 16483918 - 16484016
Alignment:
Q  130 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    ||||||||||||  ||||||||| ||||||| | |||||||||||| ||||||   ||| ||||||||||||| |||||||||||||| ||||||||||    
T  16483918 tccaaaatagtctctgtaaaatgcaaataggaactaaaagtgaatacaatttttataaggactaaacttgaaaacttgtaattttatagggactaaaaa 16484016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 42024017 - 42023896
Alignment:
Q  117 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttat 215  Q
    |||||||||  ||||||||||||||| | ||||| | ||||||||| ||||| |||||||||||||   | | |||||||||||||| |||||||||| |    
T  42024017 acacttttagtcctccaaaatagtccatataaaaagcaaatagggactaaaaatgaataaaatttttgtatgtactaaacttgaaagtttgtaattttgt 42023918  T
Q  216 atggactaaaaa-atatttaac 236  Q
    | |||||||||| |||||||||    
T  42023917 agggactaaaaacatatttaac 42023896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 39344718 - 39344841
Alignment:
Q  115 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 213  Q
    |||||||||||  ||||||||||||||  | ||||||| ||||||||| ||||||||||||||  |||| |  |||| |||||| |||||||||||||||    
T  39344718 ggacacttttagtcctccaaaatagtctctataaaatgtaaatagggactaaaagtgaataaattttttctagagaccaaacttaaaagcttgtaatttt 39344817  T
Q  214 atatggactaaaaa-atatttaac 236  Q
      | |||||||||| |||||||||    
T  39344818 gcagggactaaaaacatatttaac 39344841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 32797081 - 32797136
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttg 183  Q
    ||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||    
T  32797081 cctccaaaatagtccttataaaatgcaattagggactaaaagtgaataaaattttg 32797136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 12597002 - 12597087
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattt 212  Q
    ||||||||||||||| | ||||||| ||||||||| |||| |||||| |||| |||||   ||||| |||||||||||||||||||    
T  12597002 cctccaaaatagtccctataaaatgcaaatagggactaaacgtgaataaaaaatttgtagggactatacttgaaagcttgtaattt 12597087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 26938587 - 26938533
Alignment:
Q  188 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccctat 241  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||||||||||||    
T  26938587 gactaaacttaaaagcttgtaattttgtagggactaaaaacatatttaaccctat 26938533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 35055049 - 35054939
Alignment:
Q  129 ctccaaaatagtccttgtaaaa-tgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggact-aaaa 226  Q
    |||||||||||||| | ||||| || || || ||| ||||| |||||||| ||||||    ||||||||||||| ||||||||||| || ||||| ||||    
T  35055049 ctccaaaatagtccctataaaaatgcaattaaggactaaaaatgaataaatttttgtaggaactaaacttgaaaacttgtaattttgtaaggactgaaaa 35054950  T
Q  227 aatatttaacc 237  Q
     ||||||||||    
T  35054949 catatttaacc 35054939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 13009393 - 13009272
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatat 217  Q
    |||||||  |||||||| |||||| ||||||||| |||||| ||||||  |||||||||| ||||||   |||||||||||||||||||||||||||||     
T  13009393 acttttagtcctccaaattagtccctgtaaaatgtaaatagagattaattgtgaataaaacttttgtagggactaaacttgaaagcttgtaattttatag 13009294  T
Q  218 ggactaaaaa-atatttaaccc 238  Q
    |||||||||| |||||||||||    
T  13009293 ggactaaaaatatatttaaccc 13009272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 27567684 - 27567569
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 226  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||| |||| |||| |   |||||||||||||| ||||||||||| || ||  |||||    
T  27567684 cctccaaaatagtccttataaaatgcaaatatggattaaaagtgaagaaaacttttttagggactaaacttgaaaacttgtaattttgtaggggttaaaa 27567585  T
Q  227 a-atatttaaccctat 241  Q
    | ||||||||||||||    
T  27567584 acatatttaaccctat 27567569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 28098679 - 28098777
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa 225  Q
    ||||||||||||||| | ||||||| ||||||||| ||||||| |||||   |||||| || ||||||||| ||| |||||||||||||| | ||||||    
T  28098679 cctccaaaatagtccctataaaatgcaaatagggactaaaagtaaataatttttttgtaaaaactaaacttaaaaccttgtaattttataggaactaaa 28098777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 22485185 - 22485092
Alignment:
Q  134 aaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    ||||||||||| ||||||| ||||||||| ||||||| ||||||| |||||   |||||||||| | |||| ||||||||  | ||||||||||    
T  22485185 aaatagtccttataaaatgcaaatagggactaaaagtaaataaaaatttgtacggactaaacttaagagctggtaattttggagggactaaaaa 22485092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 30851917 - 30851817
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatggactaaaa 226  Q
    |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| |||||||||    
T  30851917 cctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataaggactaaaa 30851818  T
Q  227 a 227  Q
    |    
T  30851817 a 30851817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 11297898 - 11298014
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 218  Q
    |||||||  ||||||||||||||| | ||||||  |||||||||  ||||||||  ||||  ||  || ||||||||||||||||||||||||| ||| |    
T  11297898 acttttagtcctccaaaatagtccctttaaaatacaaatagggacaaaaagtgataaaaaaattccga-gactaaacttgaaagcttgtaatttaatagg 11297996  T
Q  219 gactaaaaa-atatttaa 235  Q
    || |||||| ||||||||    
T  11297997 gattaaaaacatatttaa 11298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 20132202 - 20132302
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 226  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||||| |  ||||||  | |||||||||||||||||| | |||||||    
T  20132202 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttgtaagaactaaatgtcaaagcttgtaattttataggaactaaaa 20132301  T
Q  227 a 227  Q
    |    
T  20132302 a 20132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 30851627 - 30851547
Alignment:
Q  157 tagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 235  Q
    |||||| ||||||||||||||  |||| |  |||||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  30851627 tagggactaaaagtgaataaatgttttatagagactaaacttgaaaatttgtaattttataaggactaaaaacatatttaa 30851547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 34471378 - 34471486
Alignment:
Q  132 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaata-aaattttgtgaagactaaacttgaaagcttgtaattttatatggacta-aaaaat 229  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||| |  ||||||  ||| ||||||| ||||||| ||||||| || |||||| ||| ||    
T  34471378 caaaatagtctctataaaatgcaaatagggactaaaagtgaatacattttttgtagagattaaactttaaagcttataattttgtaaggactagaaacat 34471477  T
Q  230 atttaaccc 238  Q
    |||||||||    
T  34471478 atttaaccc 34471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 25411505 - 25411457
Alignment:
Q  188 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 235  Q
    |||||||||||||||||| |||||||| | |||||||||| ||||||||    
T  25411505 gactaaacttgaaagcttctaattttacagggactaaaaacatatttaa 25411457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 28565069 - 28564981
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 216  Q
    ||||||||||||| | | ||||||  ||||||| ||||||||| ||||||  ||||| ||||||||| || |||  || ||||||||||    
T  28565069 cctccaaaatagttcatataaaatacaaataggaattaaaagtaaataaatctttgtaaagactaaatttaaaaatttataattttata 28564981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 33991965 - 33992033
Alignment:
Q  129 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaactt 197  Q
    |||||||||| ||||| ||||||  ||||||||| |||| ||||||||||  || || |||||||||||    
T  33991965 ctccaaaatattccttataaaatacaaatagggactaaacgtgaataaaaaattttggagactaaactt 33992033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 40391038 - 40391152
Alignment:
Q  129 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    |||||||||||||| | ||||||| ||||||||| ||||||||||| |||| |||||   |||||||||| ||| |||||||||||||| ||||||||||    
T  40391038 ctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaaatttgtagggactaaacttaaaaacttgtaattttatagggactaaaaa 40391137  T
Q  228 -atatttaaccctat 241  Q
     ||||||||||||||    
T  40391138 catatttaaccctat 40391152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 15025924 - 15026036
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 226  Q
    ||||||||||||||||| ||||||  ||||||||| ||||| ||||||||| ||||||   |||||||||| |||| |||||||||| ||  ||||||||    
T  15025924 cctccaaaatagtccttataaaatataaatagggactaaaaatgaataaaatttttgtagggactaaacttaaaagtttgtaattttgtagtgactaaaa 15026023  T
Q  227 a-atatttaaccc 238  Q
    | |||||||||||    
T  15026024 acatatttaaccc 15026036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 38377932 - 38378055
Alignment:
Q  117 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 216  Q
    |||||||||  ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  || | | ||||||| |||||| ||||| ||||| ||    
T  38377932 acacttttagtcctccaaaatagtccctataaaatgcaaatagggaataaaagtgaataaaaaattttaaggactaaatttgaaaacttgttattttgta 38378031  T
Q  217 tggac-taaaaaatatttaaccct 239  Q
     | || ||||| ||||||||||||    
T  38378032 agaacttaaaacatatttaaccct 38378055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 10574082 - 10574128
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat 174  Q
    ||||||||||||||| ||||||||| ||||||||| |||| ||||||    
T  10574082 cctccaaaatagtccctgtaaaatgcaaatagggactaaaggtgaat 10574128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 31049935 - 31049885
Alignment:
Q  187 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 236  Q
    |||||||||||||||| |||||||||| || |||||||||| |||||||||    
T  31049935 agactaaacttgaaagtttgtaattttgtaaggactaaaaacatatttaac 31049885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 6449655 - 6449606
Alignment:
Q  164 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 212  Q
    |||||||||||||| |||| || | |||||||||||||||||||||||||    
T  6449655 taaaagtgaataaattttttgtaaggactaaacttgaaagcttgtaattt 6449606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 48282889 - 48282965
Alignment:
Q  164 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 238  Q
    |||||||||||||| |||| ||   |||||||||||||||||| ||||| | || |||||||||| |||||||||||    
T  48282889 taaaagtgaataaattttttgtagggactaaacttgaaagcttttaattgtgtacggactaaaaatatatttaaccc 48282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 16943 - 16830
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    |||| |||||||||| | ||||||  ||||||||| ||||||||||||||| ||||  | ||||||||||||||| | ||||||||||| ||||||||||    
T  16943 cctctaaaatagtccctataaaatacaaatagggactaaaagtgaataaaaatttggtaggactaaacttgaaagttggtaattttatagggactaaaaa 16844  T
Q  228 -atatttaacccta 240  Q
     |||||||||||||    
T  16843 catatttaacccta 16830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 39340908 - 39341032
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttata 216  Q
    |||||||  |||||||||||||| || ||||||||||||||  | |||||||||||||  |||| || |||  |||||||||||||||||||||||||||    
T  39340908 acttttagtcctccaaaatagtcattataaaatgaaaatagaaagtaaaagtgaataattttttttgtagagactaaacttgaaagcttgtaattttata 39341007  T
Q  217 tggactaaaaa-atatttaacccta 240  Q
     ||| |||||| |||||||||||||    
T  39341008 gggattaaaaacatatttaacccta 39341032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 44446881 - 44446783
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttata 216  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||| ||||||||||| |||||||||| |  ||||||| ||||||||||||||||||||    
T  44446881 acttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaattttgtaagaactaaacgtgaaagcttgtaattttata 44446783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 34359483 - 34359592
Alignment:
Q  132 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaa-ttttatatggactaaaaa-a 228  Q
    ||||| ||||| | ||||||| ||||||| ||||||||||||||||| ||||||   |||||||||||||||||||||| ||||||| |||||||||| |    
T  34359483 caaaaaagtccctataaaatgtaaataggaattaaaagtgaataaaatttttgtagggactaaacttgaaagcttgtaatttttatagggactaaaaaca 34359582  T
Q  229 tatttaaccc 238  Q
    ||||||||||    
T  34359583 tatttaaccc 34359592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 20315035 - 20315147
Alignment:
Q  129 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    ||||||||| |||| | ||||||| ||||||||| ||||||||||||||  |||| |  |||||||||||||||| |||||||||| ||  |||||||||    
T  20315035 ctccaaaattgtccctataaaatgtaaatagggactaaaagtgaataaattttttatagagactaaacttgaaagtttgtaattttgtagtgactaaaaa 20315134  T
Q  228 -atatttaaccct 239  Q
     ||||||||||||    
T  20315135 catatttaaccct 20315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 28769535 - 28769472
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 182  Q
    |||||||| ||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||    
T  28769535 acttttaatcctccaaaatagtccttataaaatgcaaataaggactaaaagtgaataaattttt 28769472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 54783217 - 54783322
Alignment:
Q  133 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atat 231  Q
    |||||||||| ||||||||  ||||| ||||||||||  ||| |||  |||| | ||||| |||| ||||||||||||||| || |||||||||| ||||    
T  54783217 aaaatagtccctgtaaaattcaaataaggattaaaagcaaattaaaaattgtaaggactacacttaaaagcttgtaattttgtaaggactaaaaacatat 54783316  T
Q  232 ttaacc 237  Q
    ||||||    
T  54783317 ttaacc 54783322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 41544598 - 41544536
Alignment:
Q  115 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa 177  Q
    |||||||||||| | ||||||||||| | ||||||||| | ||||||| ||||||||||||||    
T  41544598 ggacacttttaatcttccaaaatagttcctgtaaaatgcatatagggactaaaagtgaataaa 41544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 44648251 - 44648301
Alignment:
Q  191 taaacttgaaagcttgtaattttatatggact-aaaaaatatttaacccta 240  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  44648251 taaacttgaaagtttgtaattttatagggactaaaaaaatatttaacccta 44648301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 50334653 - 50334542
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 226  Q
    |||| |||||||||| | ||||||| ||||||| | ||||||||||||||  ||||||   ||||||| |||||| ||| |||||||| | ||| |||||    
T  50334653 cctctaaaatagtccctataaaatgcaaataggaactaaaagtgaataaattttttgtagggactaaatttgaaaacttataattttagaaggattaaaa 50334554  T
Q  227 a-atatttaacc 237  Q
    | ||||||||||    
T  50334553 acatatttaacc 50334542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 19343700 - 19343790
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttatat 217  Q
    |||||||| |||||||| ||||||| ||||||||| |||||||||||||| |||| || ||   ||||||||||||||||||||||||||||    
T  19343700 cctccaaactagtccttataaaatgcaaatagggactaaaagtgaataaattttt-tgcagggcctaaacttgaaagcttgtaattttatat 19343790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 38948658 - 38948783
Alignment:
Q  115 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 214  Q
    |||||||||||  || || ||||||||| | ||||||  |||||||||  ||||||||||||  ||||||  ||||||||||||||| |||||||||||     
T  38948658 ggacacttttagtccacccaaatagtccctataaaattcaaatagggaccaaaagtgaataatgttttgtatagactaaacttgaaaacttgtaattttg 38948757  T
Q  215 tatggactaaaaa-atatttaaccct 239  Q
    ||   |||||||| ||||||||||||    
T  38948758 tagaaactaaaaacatatttaaccct 38948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 5459167 - 5459047
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatat 217  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||||||||| ||||| ||||  ||||   |||||||||| ||| ||| ||||||||||     
T  5459167 acttttattcctccaaaatagtccctataaaatgcaaatagggattaaaaatgaataaaaaaattgtagggactaaacttaaaaacttataattttatag 5459068  T
Q  218 ggactaaaaa-atatttaacc 237  Q
     ||||||||| ||||||||||    
T  5459067 agactaaaaacatatttaacc 5459047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 26724251 - 26724314
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 182  Q
    |||||||  ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||    
T  26724251 acttttagtcctccaaaatagtccttataaaatgaaaatagagactaaaagtgaataaattttt 26724314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 16089824 - 16089921
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttat 215  Q
    |||||||  |||| |||||||||| | ||||||| ||||| ||| ||||||||||| |||| ||||| | |||||||| |||||| ||||||||||||    
T  16089824 acttttagtcctctaaaatagtccctataaaatgcaaatatggactaaaagtgaataaaaaatttgtaaggactaaacgtgaaagtttgtaattttat 16089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 22860948 - 22860871
Alignment:
Q  164 taaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 239  Q
    ||||||||||||||| |||||| || ||||||||| ||||||||||||||| || |||||||||| | ||||||||||    
T  22860948 taaaagtgaataaaagttttgtaaaaactaaactttaaagcttgtaattttgtagggactaaaaacacatttaaccct 22860871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 1298845 - 1298951
Alignment:
Q  133 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa---attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-a 228  Q
    |||||||||| | ||||||| ||||||||| ||||||||||||||    ||||||   ||||||| || ||||||||||||||| || |||||||||| |    
T  1298845 aaaatagtccctataaaatgcaaatagggactaaaagtgaataaattttttttgtagggactaaatttaaaagcttgtaattttgtagggactaaaaaca 1298944  T
Q  229 tatttaa 235  Q
    |||||||    
T  1298945 tatttaa 1298951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 3746826 - 3746943
Alignment:
Q  121 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatgga 220  Q
    |||||| ||||||||| ||||| | ||||||| |||||  ||||| ||||||||||| ||||||  ||||||||||| ||   || ||| ||| |||| |    
T  3746826 ttttaatcctccaaaacagtccctataaaatgtaaatatagattataagtgaataaatttttgtagagactaaacttaaatagttataactttgtatgaa 3746925  T
Q  221 ctaaaaa-atatttaacc 237  Q
    ||||||| ||||||||||    
T  3746926 ctaaaaacatatttaacc 3746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 35270847 - 35270932
Alignment:
Q  154 aaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa-aaatatttaaccc 238  Q
    |||||||||||||||||||||||| |||| |   ||||||||||||||| || ||||||| || | |||||| | |||||||||||    
T  35270847 aaatagggattaaaagtgaataaatttttatagggactaaacttgaaagtttttaattttgtaggaactaaagacatatttaaccc 35270932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 39057200 - 39057091
Alignment:
Q  130 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa- 227  Q
    |||||||||||||   ||||||| ||||| ||||||||||||||||||  ||||||  |||| |||||| |||  |||||||||| ||  |||||||||     
T  39057200 tccaaaatagtcccaataaaatgtaaataaggattaaaagtgaataaattttttgtagagaccaaacttaaaaatttgtaattttgtagagactaaaaat 39057101  T
Q  228 atatttaacc 237  Q
    ||||||||||    
T  39057100 atatttaacc 39057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 15070070 - 15070180
Alignment:
Q  132 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaa--gactaaacttgaaagcttgtaattttatatggactaaaaa-a 228  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||||| |||| || |  |||||||||| |||  |||||||||| ||  ||||||||| |    
T  15070070 caaaatagtctctataaaatgtaaatagggactaaaagtgaataaatttttttgtagggactaaacttaaaaatttgtaattttttagagactaaaaata 15070169  T
Q  229 tatttaaccct 239  Q
    |||||| ||||    
T  15070170 tatttatccct 15070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 35529755 - 35529832
Alignment:
Q  164 taaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacccta 240  Q
    ||||||||||||||||||| ||| | |||||||||||||  | || |||||||| |||||||||| |||||||||||||    
T  35529755 taaaagtgaataaaatttt-tgagggactaaacttgaaacgtcgtgattttatagggactaaaaacatatttaacccta 35529832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 36235902 - 36235952
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa 178  Q
    ||||||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  36235902 cctccaaaatagtccttataaaatgcaaataaggactaaaaatgaataaaa 36235952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 16545430 - 16545330
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaa 226  Q
    |||||||||||||||||  |||||| |||| || | |||||||||||||| |||| ||  ||||||||||| ||| |||||||||||||| |||||||||    
T  16545430 cctccaaaatagtccttacaaaatgcaaattggtagtaaaagtgaataaattttttgtacagactaaacttaaaaacttgtaattttatagggactaaaa 16545331  T
Q  227 a 227  Q
    |    
T  16545330 a 16545330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 33752979 - 33752867
Alignment:
Q  129 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatt-ttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    |||||||||||||| | ||||||| ||||| ||| |||||||||||||||   ||||   || |||||| ||||||||||||||||||| ||||||||||    
T  33752979 ctccaaaatagtccctataaaatgtaaataaggactaaaagtgaataaaaaaattgtagggattaaactggaaagcttgtaattttatagggactaaaaa 33752880  T
Q  228 -atatttaaccct 239  Q
     ||||||||||||    
T  33752879 catatttaaccct 33752867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 23230894 - 23230789
Alignment:
Q  137 tagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atattta 234  Q
    |||||||| ||||||| | |||| || ||||||||||| ||||||||||   ||||||||||| ||  |||||||||| ||  ||||||||| |||||||    
T  23230894 tagtccttataaaatgtatatagtgactaaaagtgaataaaaattttgtagggactaaacttgtaaatttgtaattttgtagagactaaaaacatattta 23230795  T
Q  235 acccta 240  Q
    ||||||    
T  23230794 acccta 23230789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 3891594 - 3891676
Alignment:
Q  132 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaat-tttgtgaagactaaacttgaaagcttgtaatttt 213  Q
    ||||||||||  | ||||||  ||||||||||||||||| ||||||||  ||||  ||| ||||||||||| |||||||||||    
T  3891594 caaaatagtctctataaaatacaaatagggattaaaagtaaataaaataattgtagagattaaacttgaaaacttgtaatttt 3891676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 29307622 - 29307512
Alignment:
Q  128 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggac-taaa 225  Q
    ||||||||||||||| | ||||||| ||||||||| ||| ||| ||| |||| |||||   ||||||||||  ||  ||||||||||||| |||| ||||    
T  29307622 cctccaaaatagtccctataaaatgcaaatagggactaagagttaataaaaaatttgtagggactaaacttttaaaattgtaattttatagggacttaaa 29307523  T
Q  226 aaatatttaac 236  Q
    | |||||||||    
T  29307522 acatatttaac 29307512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 152186 - 152078
Alignment:
Q  132 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-at 229  Q
    ||||||||||  | ||||||| ||||| ||| ||||||||| ||||| |||||| ||||||||||||| |||| | ||||||| || |||||||||| ||    
T  152186 caaaatagtctctataaaatgcaaataaggactaaaagtgagtaaaacttttgtaaagactaaacttgtaagcctataattttgtagggactaaaaacat 152087  T
Q  230 atttaaccc 238  Q
    |||||||||    
T  152086 atttaaccc 152078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 253775 - 253680
Alignment:
Q  119 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaatttt 213  Q
    |||||||| ||||||||||||||| | ||||||| | |||| |||||||| |||||||   ||||||  |||||||| || |||||||||||||||    
T  253775 acttttaatcctccaaaatagtccctataaaatgcagatagagattaaaaatgaataatttttttgtagagactaaatttaaaagcttgtaatttt 253680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 7495 - 7414
Alignment:
Q  146 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 227  Q
    ||||||| ||||||||| ||||| |||||||||  || |  ||| |||||||||||||||||||||| ||| ||| ||||||    
T  7495 taaaatgcaaatagggactaaaaatgaataaaaaattttcgagattaaacttgaaagcttgtaatttaatagggattaaaaa 7414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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