View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_170 (Length: 252)
Name: NF0583_low_170
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_170 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 827698 - 827516
Alignment:
| Q |
40 |
cacagaatgaaaatgaaagaaaaacacaatgtatggatcttgcaactcattgagctttcacgtgctgcagaacaacattgtaggcttcatgttcctcccc |
139 |
Q |
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| T |
827698 |
cacagaatgaaaatgaaagaaaaacacaatgtatggatcttgcaactcattgagctttcacgtgctgcagaacaacattgtaggcttcatgttcctcccc |
827599 |
T |
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| Q |
140 |
aaagtcctggccacgaccacatccaacagttaaaaccaggcaaaacaccaaccgacaaaagaaaagaaaaacattaatttgat |
222 |
Q |
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| T |
827598 |
aaagtcctggccacgaccacatccaacagttaaaaccaggcaaaacaccaatcgaaaaaagaaaagaaaaacattaatttgat |
827516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 27864986 - 27865093
Alignment:
| Q |
40 |
cacagaatgaaaatgaaagaaaaacacaatgtatggatcttgcaactcattgagctttcacgtgctgcagaacaacattgtaggcttcatgttcctcccc |
139 |
Q |
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| T |
27864986 |
cacaaaatgaaaatgaaaaaagaatgcaatgtatggatcttgcaactcattgagctttgacgtgctgcaaaacaacattgtaggcttcatgttcctcccc |
27865085 |
T |
|
| Q |
140 |
aaagtcct |
147 |
Q |
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||| |||| |
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| T |
27865086 |
aaaatcct |
27865093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 39232575 - 39232632
Alignment:
| Q |
79 |
ttgcaactcattgagctttcacgtgctgcagaacaacattgtaggcttcatgttcctc |
136 |
Q |
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| T |
39232575 |
ttgcaactcagttagatttcacgtgctgaagaacaacgttgtatgcttcatgttcctc |
39232632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 3978661 - 3978605
Alignment:
| Q |
92 |
agctttcacgtgctgcagaacaacattgtaggcttcatgttcctccccaaagtcctg |
148 |
Q |
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|||||| || || |||| ||||||||| ||||||||||||||||||||||| ||||| |
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| T |
3978661 |
agcttttacatgttgcaaaacaacattataggcttcatgttcctccccaaaatcctg |
3978605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 25914400 - 25914446
Alignment:
| Q |
67 |
aatgtatggatcttgcaactcattgagctttcacgtgctgcagaaca |
113 |
Q |
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| T |
25914400 |
aatgtatgtatcttgcaactcattcagatttcacgtgccgcagaaca |
25914446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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