View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_171 (Length: 252)

Name: NF0583_low_171
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_171
NF0583_low_171
[»] chr7 (2 HSPs)
chr7 (1-114)||(36882344-36882456)
chr7 (172-225)||(36882480-36882533)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 36882344 - 36882456
Alignment:
Q  1 aaattgcttataattgagactagaggatgtaattatcatgtttcactctgagaagccaaatccctannnnnnnnatttaagtggaaataaaatcgtatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||    
T  36882344 aaattgcttataattgagactagaggatgtaattatcatgtttcactctgagaagccaagtcccta-tttatttatttaagtggaaataaaatcgtatct 36882442  T
Q  101 ttccatattcaacc 114  Q
    ||||||||||||||    
T  36882443 ttccatattcaacc 36882456  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 36882480 - 36882533
Alignment:
Q  172 gctcattcgtatttcttttccttccacaggtgacacaagcaatctcgtgtagtg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36882480 gctcattcgtatttcttttccttccacaggtgacacaagcaatctcgtgtagtg 36882533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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