View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_174 (Length: 251)

Name: NF0583_low_174
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_174
NF0583_low_174
[»] chr2 (10 HSPs)
chr2 (23-179)||(28183044-28183200)
chr2 (13-179)||(28171437-28171603)
chr2 (29-102)||(28174660-28174733)
chr2 (13-73)||(28214379-28214439)
chr2 (13-73)||(28221845-28221905)
chr2 (131-175)||(28158708-28158752)
chr2 (131-175)||(28169277-28169321)
chr2 (20-72)||(32310404-32310456)
chr2 (20-72)||(32564364-32564416)
chr2 (20-72)||(32814027-32814079)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 28183044 - 28183200
Alignment:
Q  23 tatacttcttgatttgcttagtcagatgaggcaaaactgtccagacaacaagaatatcagcagcggaatcgacaagttttcaacgtttgtgattttgaag 122  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||| |||    
T  28183044 tatacttcttgatttccttagtcagatgaggcaaaactgtccagacaacaagaatatcagcagcagaatcaacaagtttttgacgtttgtgatttttaag 28183143  T
Q  123 caaatgaatgttcactctaacagcaaagggatgtcatacatgcaagtgttgtcatct 179  Q
    | |||||||| |||||||||||  |||||||||||||||||| ||| ||||||||||    
T  28183144 ccaatgaatgctcactctaacaaaaaagggatgtcatacatggaagcgttgtcatct 28183200  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 28171437 - 28171603
Alignment:
Q  13 cagacctgagtatacttcttgatttgcttagtcagatgaggcaaaactgtccagacaacaagaatatcagcagcggaatcgacaagttttcaacgtttgt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  |||  |||| |||||||||| ||||| ||    
T  28171437 cagacctgagtatacttcttgatttgcttagtaagatgaggcaaaactgtcaagacaacaagaatatcaatagcacaatcaacaagttttcgacgttagt 28171536  T
Q  113 gattttgaagcaaatgaatgttcactctaacagcaaagggatgtcatacatgcaagtgttgtcatct 179  Q
    ||||| ||| | ||||||||||||| |||||||||| || ||||||| |||||||||||||||||||    
T  28171537 gatttcgaacccaatgaatgttcacgctaacagcaacggaatgtcattcatgcaagtgttgtcatct 28171603  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 28174660 - 28174733
Alignment:
Q  29 tcttgatttgcttagtcagatgaggcaaaactgtccagacaacaagaatatcagcagcggaatcgacaagtttt 102  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||    
T  28174660 tcttgattttcttagtcagatgaggctaaactgtccagacaacaagactatcagcagcagaatcgacaagtttt 28174733  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 28214439 - 28214379
Alignment:
Q  13 cagacctgagtatacttcttgatttgcttagtcagatgaggcaaaactgtccagacaacaa 73  Q
    |||||| |||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||    
T  28214439 cagacccgagtatacctctcgatttccttagtcagatgaggcaaaactgtcctgacaacaa 28214379  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 28221845 - 28221905
Alignment:
Q  13 cagacctgagtatacttcttgatttgcttagtcagatgaggcaaaactgtccagacaacaa 73  Q
    |||||| |||||||| ||| ||||| || ||||||||||||||||||||||| ||||||||    
T  28221845 cagacccgagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa 28221905  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 28158708 - 28158752
Alignment:
Q  131 tgttcactctaacagcaaagggatgtcatacatgcaagtgttgtc 175  Q
    ||||||||||||||| |||| |||||||| |||||||| ||||||    
T  28158708 tgttcactctaacagaaaagtgatgtcatgcatgcaagagttgtc 28158752  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 28169277 - 28169321
Alignment:
Q  131 tgttcactctaacagcaaagggatgtcatacatgcaagtgttgtc 175  Q
    ||||||||||||||| |||| |||||||| |||||||| ||||||    
T  28169277 tgttcactctaacagaaaagtgatgtcatgcatgcaagagttgtc 28169321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 32310404 - 32310456
Alignment:
Q  20 gagtatacttcttgatttgcttagtcagatgaggcaaaactgtccagacaaca 72  Q
    |||||||| ||| ||||| || ||||||||||||| ||||||||| |||||||    
T  32310404 gagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaaca 32310456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 32564416 - 32564364
Alignment:
Q  20 gagtatacttcttgatttgcttagtcagatgaggcaaaactgtccagacaaca 72  Q
    |||||||| ||| ||||| || ||||||||||||| ||||||||| |||||||    
T  32564416 gagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaaca 32564364  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 32814079 - 32814027
Alignment:
Q  20 gagtatacttcttgatttgcttagtcagatgaggcaaaactgtccagacaaca 72  Q
    |||||||| ||| ||||| || ||||||||||||| ||||||||| |||||||    
T  32814079 gagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaaca 32814027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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