View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_177 (Length: 251)
Name: NF0583_low_177
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_177 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 6192022 - 6191779
Alignment:
| Q |
8 |
ccaacaatatacaaggcatttctcaaaaagaaagttgaagagttacctcctatcattagacaaaggttttttctaagtttcctttaagaaatgtgggtaa |
107 |
Q |
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| T |
6192022 |
ccaacaatatacaaggcatttctcaaaaagaaagttgaagagttacctcctatcattagacaaaggttttttctaagtttcctttaagaattgtgggtaa |
6191923 |
T |
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| Q |
108 |
tttaccaaacatcgcatgaaaattagccacagtggtaaatttgcaagtggagtaaaaattagcttgtgggtactgtttgcaaattcctcaaagacggcct |
207 |
Q |
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| T |
6191922 |
tttaccaaacatcgcatgaaaattagccacagtcgtaaatttgcaagtggagtaaaaattagcttgtgggtactgtttgcaaattcttcaaagacggcct |
6191823 |
T |
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| Q |
208 |
tactttacacaaataaaaaaggaatctggtctcctatctcttat |
251 |
Q |
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| T |
6191822 |
tactttacacaaataaaaaaggaatctggtctcctatctcttat |
6191779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 31458422 - 31458474
Alignment:
| Q |
124 |
tgaaaattagccacagtggtaaatttgcaagtggagtaaaaattagcttgtgg |
176 |
Q |
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| T |
31458422 |
tgaaaattagccacattagtaaatatgcaagtagagtaaaaactagcttgtgg |
31458474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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