View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_179 (Length: 250)

Name: NF0583_low_179
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_179
NF0583_low_179
[»] chr2 (5 HSPs)
chr2 (1-235)||(34847295-34847526)
chr2 (145-211)||(752123-752189)
chr2 (71-127)||(752201-752258)
chr2 (164-204)||(17910905-17910945)
chr2 (160-212)||(39792079-39792131)
[»] chr1 (6 HSPs)
chr1 (145-196)||(34620606-34620657)
chr1 (160-196)||(7445003-7445039)
chr1 (160-211)||(36995204-36995255)
chr1 (90-127)||(34620669-34620706)
chr1 (93-126)||(34766064-34766097)
chr1 (164-208)||(41885563-41885607)
[»] chr4 (2 HSPs)
chr4 (160-196)||(53234307-53234343)
chr4 (160-194)||(26009668-26009702)
[»] chr8 (6 HSPs)
chr8 (185-216)||(41235939-41235970)
chr8 (94-124)||(8871210-8871240)
chr8 (161-194)||(14955209-14955242)
chr8 (163-212)||(32202993-32203042)
chr8 (160-196)||(37953237-37953273)
chr8 (160-196)||(41570126-41570162)
[»] chr5 (1 HSPs)
chr5 (160-211)||(41384823-41384873)
[»] chr7 (3 HSPs)
chr7 (178-211)||(16082554-16082587)
chr7 (160-197)||(29559227-29559264)
chr7 (180-216)||(26980708-26980744)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 34847526 - 34847295
Alignment:
Q  1 acacaaaactttagcacattttcttattagaaaatactaacaagtactcttaggacatttgatgagaaacctaaaaaagaaattatgtctgggattgata 100  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||| |||| || ||||||||    
T  34847526 acacaaaactttagcacatttacttattagaaaatgctaacaagtgctcttaggatatttgatgagaagcctaaaaaagaaataatgtatgagattgata 34847427  T
Q  101 cattcaacacattgaaacttaaaaaagnnnnnnnnnnnnnnnnnacataaaactaactgattatttctattttagaatccttaacaagtgccctaatgac 200  Q
     ||||||||||||||||| | ||||||                 |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||    
T  34847426 tattcaacacattgaaacctgaaaaag---tattttttttttttacataaaacttattgattatttctattttagaatctttaacaagtgccctaatgac 34847330  T
Q  201 acttgttagcatttccattacttatatactacccc 235  Q
    |||||||||||||||| ||||||||||||||||||    
T  34847329 acttgttagcatttccgttacttatatactacccc 34847295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 752189 - 752123
Alignment:
Q  145 acataaaactaactgattatttctattttagaatccttaacaagtgccctaatgacacttgttagca 211  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||||||||| |  |||||||||||    
T  752189 acataaaactaaccaattatttctattttagaattcttaacaagtgccctaagggtacttgttagca 752123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 752258 - 752201
Alignment:
Q  71 ctaaaaaagaaattatgtct-gggattgatacattcaacacattgaaacttaaaaaag 127  Q
    ||||| |||||||| ||||| ||||||||| |||||||||||||||||||| ||||||    
T  752258 ctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaag 752201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 17910945 - 17910905
Alignment:
Q  164 tttctattttagaatccttaacaagtgccctaatgacactt 204  Q
    |||||||||||||||| ||||||||| | ||||||||||||    
T  17910945 tttctattttagaatctttaacaagttctctaatgacactt 17910905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 39792079 - 39792131
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccctaatgacacttgttagcat 212  Q
    ||||||||| |||| |||| ||||||||||| ||||| |||| ||||||||||    
T  39792079 attatttctttttttgaattcttaacaagtgtcctaaagacatttgttagcat 39792131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 34620657 - 34620606
Alignment:
Q  145 acataaaactaactgattatttctattttagaatccttaacaagtgccctaa 196  Q
    |||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  34620657 acataaaacttaccaattatttctattttagaatccttaacaagtgccctaa 34620606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 7445003 - 7445039
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccctaa 196  Q
    |||||||||||||||||||| ||||||||||||||||    
T  7445003 attatttctattttagaatctttaacaagtgccctaa 7445039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 36995255 - 36995204
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccctaatgacacttgttagca 211  Q
    |||||||| ||||| | |||||||||||||||||||| | ||||||||||||    
T  36995255 attatttccatttttgtatccttaacaagtgccctaagggcacttgttagca 36995204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 34620706 - 34620669
Alignment:
Q  90 tgggattgatacattcaacacattgaaacttaaaaaag 127  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  34620706 tgggattgatgcattcaacacattgaaacttgaaaaag 34620669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 34766097 - 34766064
Alignment:
Q  93 gattgatacattcaacacattgaaacttaaaaaa 126  Q
    |||||||| |||||||||||||||||||||||||    
T  34766097 gattgatatattcaacacattgaaacttaaaaaa 34766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 41885563 - 41885607
Alignment:
Q  164 tttctattttagaatccttaacaagtgccctaatgacacttgtta 208  Q
    |||||||| | |||||||||||||||||||||| |||||| ||||    
T  41885563 tttctattcttgaatccttaacaagtgccctaaggacactcgtta 41885607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 53234307 - 53234343
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccctaa 196  Q
    |||||||||||||||||||||||||||||||| ||||    
T  53234307 attatttctattttagaatccttaacaagtgcgctaa 53234343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 26009702 - 26009668
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccct 194  Q
    |||||||||||||||||||||||||||| ||||||    
T  26009702 attatttctattttagaatccttaacaaatgccct 26009668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 41235939 - 41235970
Alignment:
Q  185 caagtgccctaatgacacttgttagcatttcc 216  Q
    ||||||||||||||||||||||||||||||||    
T  41235939 caagtgccctaatgacacttgttagcatttcc 41235970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 8871210 - 8871240
Alignment:
Q  94 attgatacattcaacacattgaaacttaaaa 124  Q
    |||||||||||||||||||||||||||||||    
T  8871210 attgatacattcaacacattgaaacttaaaa 8871240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 14955242 - 14955209
Alignment:
Q  161 ttatttctattttagaatccttaacaagtgccct 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  14955242 ttatttctatttttgaatccttaacaagtgccct 14955209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 32203042 - 32202993
Alignment:
Q  163 atttctattttagaatccttaacaagtgccctaatgacacttgttagcat 212  Q
    ||||||| ||| |||||||||||||||||||||| | |||||| ||||||    
T  32203042 atttctaattttgaatccttaacaagtgccctaagggcacttgctagcat 32202993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 37953273 - 37953237
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccctaa 196  Q
    |||||||||||||| |||||||||||||||| |||||    
T  37953273 attatttctatttttgaatccttaacaagtgtcctaa 37953237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 41570126 - 41570162
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccctaa 196  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  41570126 attatttctattttggaaaccttaacaagtgccctaa 41570162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 41384823 - 41384873
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccctaatgacacttgttagca 211  Q
    |||||||||||||| ||||||||||||| || ||||| ||||||||||||||    
T  41384823 attatttctatttttgaatccttaacaaatgtcctaa-gacacttgttagca 41384873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 16082554 - 16082587
Alignment:
Q  178 tccttaacaagtgccctaatgacacttgttagca 211  Q
    ||||||||||||||||| ||||||||||||||||    
T  16082554 tccttaacaagtgcccttatgacacttgttagca 16082587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 29559227 - 29559264
Alignment:
Q  160 attatttctattttagaatccttaacaagtgccctaat 197  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  29559227 attatttatatttttgaatccttaacaagtgccctaat 29559264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 26980708 - 26980744
Alignment:
Q  180 cttaacaagtgccctaatgacacttgttagcatttcc 216  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  26980708 cttaacaattgctctaatgacacttgttagcatttcc 26980744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 920 times since January 2019
Visitors: 3837