View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_180 (Length: 249)
Name: NF0583_low_180
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_180 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 2601056 - 2601232
Alignment:
| Q |
19 |
ccaccaattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccata |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2601056 |
ccaccaattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccata |
2601155 |
T |
|
| Q |
119 |
cggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaacttctgtgctcct |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |
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| T |
2601156 |
cggcaaaaacaagaccattgcttcctatgcctaagcctttagctaagccttgtttcaatcccaacttcagtggtcct |
2601232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 2573589 - 2573740
Alignment:
| Q |
31 |
attgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaa |
130 |
Q |
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|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |
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| T |
2573589 |
attgaaattccaactgaataaacagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacatcaaagaccatacagcaaaaacaa |
2573688 |
T |
|
| Q |
131 |
gaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaa |
182 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||||||||||||||||||| |
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|
| T |
2573689 |
gaccattgcttcctatgcctatgcctttcgccaagccttgtttcaatcccaa |
2573740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 2619294 - 2619167
Alignment:
| Q |
55 |
gtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagc |
154 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
2619294 |
gtaccacctttagcaccatgatacatgaccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattgcttcctatgcctaagc |
2619195 |
T |
|
| Q |
155 |
ctttggctaagccttgtttcaatcccaa |
182 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
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|
| T |
2619194 |
ctttagctaagccttgtttcaatcccaa |
2619167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 2678091 - 2678222
Alignment:
| Q |
55 |
gtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||| |||||||||||||||| | |||| |
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|
| T |
2678091 |
gtaccacctttagcaccatgatacatgaccattctgctaccataaaaggacataaaggaccatatagcaaaaacaacaccattgcttcctatggccaagc |
2678190 |
T |
|
| Q |
155 |
ctttggctaagccttgtttcaatcccaacttc |
186 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
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|
| T |
2678191 |
ctttagctaagccttgtttcaatcccaacttc |
2678222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 2585635 - 2585472
Alignment:
| Q |
23 |
caattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggc |
122 |
Q |
| |
|
||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| || ||||||| || |
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|
| T |
2585635 |
caattgctaatgaaaatccaactgaataaacggtaccacctttagcaccatgatacataaccattctgctaccataatatgccataaaagaccatatagc |
2585536 |
T |
|
| Q |
123 |
aaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaacttc |
186 |
Q |
| |
|
|||| || |||||||||||||||| | ||||| || ||||| ||||||||||||||||||||| |
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|
| T |
2585535 |
aaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaatcccaacttc |
2585472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 2645866 - 2646004
Alignment:
| Q |
48 |
ataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatg |
147 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| || || || |||||||||| |||||||||||||||| |
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|
| T |
2645866 |
ataaacagtaccacctttagcaccatgatacatgaccattctgctaccataataagtcataaaagaagctattgcaaaaacaacaccattgcttcctatg |
2645965 |
T |
|
| Q |
148 |
cctaagcctttggctaagccttgtttcaatcccaacttc |
186 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||| |
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|
| T |
2645966 |
gcaaaacctttagctaagccttgtttcaatcccaacttc |
2646004 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 2432150 - 2431993
Alignment:
| Q |
19 |
ccaccaattgcgattgaaactccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccata |
118 |
Q |
| |
|
||||||||||| | || ||||||||| | | || ||||| ||||||||||||||||||||||||||| |||||||||| ||| | || || ||||||| |
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|
| T |
2432150 |
ccaccaattgctaatgttactccaactacaaatactgtaccgcctttagcaccatgatacatgaccattatgctaccatagtagaatattaaagaccata |
2432051 |
T |
|
| Q |
119 |
cggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaa |
176 |
Q |
| |
|
||| | |||| |||||||||||||||| |||||||||| || || ||||||||||| |
|
|
| T |
2432050 |
tagcatagacaacaccattgcttcctatggctaagcctttagccaaaccttgtttcaa |
2431993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 2448149 - 2448018
Alignment:
| Q |
55 |
gtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| | | |||| | ||||||||||||| |||||| |
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|
| T |
2448149 |
gtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaatatacacaatagcattgcttcctatagctaagc |
2448050 |
T |
|
| Q |
155 |
ctttggctaagccttgtttcaatcccaacttc |
186 |
Q |
| |
|
|||| | |||||||||||||||||||||||| |
|
|
| T |
2448049 |
ctttaaccaagccttgtttcaatcccaacttc |
2448018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 33801957 - 33801858
Alignment:
| Q |
83 |
ccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaa |
182 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
33801957 |
ccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattgcttcctatgcttaagcctttagctaagccttgtttcaatcccaa |
33801858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 53664676 - 53664775
Alignment:
| Q |
83 |
ccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattgcttcctatgcctaagcctttggctaagccttgtttcaatcccaa |
182 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
53664676 |
ccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattacttcctatgcttaagcctttagctaagccttgtttcaatcccaa |
53664775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 17874207 - 17874351
Alignment:
| Q |
38 |
ctccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccatt |
137 |
Q |
| |
|
||||||||| | |||| || || |||||||||||||||||||| |||| | |||||||||||||| |||| || ||||| | ||||| |||| |||||| |
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|
| T |
17874207 |
ctccaactgcaaaaactgtccctcctttagcaccatgatacataaccaatttgctaccataatagcacatgaaggaccaaattgcaaagacaacaccatt |
17874306 |
T |
|
| Q |
138 |
gcttcctatgcctaagcctttggctaagccttgtttcaatcccaa |
182 |
Q |
| |
|
|||||| || |||| ||||| ||||| |||||||| || ||||| |
|
|
| T |
17874307 |
gcttccaattgctaaacctttagctaatccttgttttaaacccaa |
17874351 |
T |
|
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