View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_19 (Length: 593)
Name: NF0583_low_19
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Original strand, 7175629 - 7176182
Alignment:
| Q |
8 |
ccaacaatatgtcttgtagcaacaaattcttcatcattttcaactccttccacacaccttaaatgccttaaatttgcaacctttgctttaaaatcactat |
107 |
Q |
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| T |
7175629 |
ccaacaatatgtcttgtagcaacaaattcttcatcattttcaacttcttccacacaccttacatgccttaaatttgcaacctttgctttaaaatcactat |
7175728 |
T |
|
| Q |
108 |
caagaagtatgttactacactttagatccttatgaatatgtgaaggagaagtgaaactatgaagatattcaactcctattgccacatctaatgcaatctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175729 |
caagaagtatgttactacactttagatccttatgaatatgtggaggagaagtgaaactatgaagatattcaactcctattgccacatctaatgcaatctt |
7175828 |
T |
|
| Q |
208 |
tattctccgaatccaactcagaatatttccatcatccannnnnnngttagaaaataaccaatcacttaatgctccattagcagcatactcataaacaagg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175829 |
tattctccgaatccaactcagaatatttccatcatccatttttttgttagaaaataaccaatcacttaatgctccattagcagcatactcataaacaagg |
7175928 |
T |
|
| Q |
308 |
taccaatgtccttgattgaagctaacaccggaaagacgaataacattggaatggttaactttgtttagaatttgtatctcttttgaaacatctccttctg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175929 |
taccaatgtccttgattgaagctaacaccggaaagacgaataacattggaatggttaactttgtttagaatttgtatctcttttgaaacatctccttctg |
7176028 |
T |
|
| Q |
408 |
tcttcttaatcgcagccaaatcgcctttaataaggccgcgataaacagttcctttaacccgacaacttggactaaaattatcagttgcaaccttaatttc |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7176029 |
tcttcttaatcgcagccaaatcgcctttaataaggccgcgataaacagttcctttaacccgacaacttggactaaaattatcagttgcaaccttaatttc |
7176128 |
T |
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| Q |
508 |
ctcaaaatcatacactttgaaagattgagctataccacatataatctcagacaa |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7176129 |
ctcaaaatcatacactttgaaagattgagctataccacatataatctcagacaa |
7176182 |
T |
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