View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_low_200 (Length: 214)
Name: NF0583_low_200
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_200 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 34053109 - 34052961
Alignment:
| Q |
30 |
cttgcaaccaaagttgcgaaaaacagaagctgttctgacataggaagtcccaatggcccaagtgttgtgatgttgtttttgagtgcttccccggcgaccg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||| |||| |
|
|
| T |
34053109 |
cttgcaaccaaagttgcgaaaaacagaagctgttctgacataggaagtaccaatggaccaagtgttgtgatgttggttttcagtgcttctccggcaaccg |
34053010 |
T |
|
| Q |
130 |
ccattaaatcttttgagagtgatacaccaattgatttcttctcatcttc |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34053009 |
ccattaaatcttttgagagtgatacaccaattgatttcttctcatcttc |
34052961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 15239383 - 15239283
Alignment:
| Q |
57 |
agctgttctgacataggaagtcccaatggcccaagtgttgtgatgttgtttttgagtgcttccccggcgaccgccattaaatcttttgagagtgatacac |
156 |
Q |
| |
|
|||||||| |||||||| || | ||||| || | |||||||||||| ||||||||||||| ||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
15239383 |
agctgttccgacataggtaggactaatggtcctaatgttgtgatgtttgttttgagtgcttctccggcaacagccattaggtcttttgagagtgatacac |
15239284 |
T |
|
| Q |
157 |
c |
157 |
Q |
| |
|
| |
|
|
| T |
15239283 |
c |
15239283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1159 times since January 2019
Visitors: 3840